Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,027,955 | A→T | 13.2% | intergenic (‑43/+68) | PP_5277 ← / ← kauB | MFS transporter/4‑guanidinobutyraldehyde dehydrogenase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,027,955 | 0 | A | T | 13.2% | 96.8 / 8.2 | 38 | intergenic (‑43/+68) | PP_5277/kauB | MFS transporter/4‑guanidinobutyraldehyde dehydrogenase |
Reads supporting (aligned to +/- strand): ref base A (9/24); new base T (2/3); total (11/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.15e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.00e-01 |
AGCCCCAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCAC > NC_002947/6027807‑6028087 | aGCCCCAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCaa < 2:880029/150‑1 (MQ=255) ccAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGccc > 2:132900/1‑150 (MQ=255) cAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCg < 1:132900/150‑1 (MQ=255) gCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTc < 2:2389563/150‑1 (MQ=255) gCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTc < 1:941711/150‑1 (MQ=255) gCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTc < 1:2420335/150‑1 (MQ=255) tCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCTTGCCCGcaaatg < 1:27365/150‑6 (MQ=255) ggCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCTACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAAc < 1:327271/150‑1 (MQ=255) gcgcAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACg < 2:1010060/150‑1 (MQ=255) cAGGTACACCAGCTGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGACAACGATTCTCCAACGCATTTCATCCTCCCAGCCAATATGTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTc < 1:757468/150‑1 (MQ=255) gggACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTcgc < 2:1666812/150‑1 (MQ=255) gggACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTCACCGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTcgc < 2:1664166/150‑1 (MQ=255) acCAGCGGCATGCTCACGCCAAGCTCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGa < 1:90683/150‑1 (MQ=255) ccAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGAc > 1:2235362/1‑150 (MQ=255) cGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGc < 1:1303661/150‑1 (MQ=255) gCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGc < 2:2062237/150‑1 (MQ=255) gCTCACGCCAAGCGCCAGCCCGACACTAAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGc < 2:570044/150‑1 (MQ=255) gCTCACCCCAAGTCCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGATACCCTACTACATTATGTCCCCACCGCCAATATTTCCCGGGGCCCCTTTGCGGGCAAGCCCCCTCCTGCAACGGTCGCGAAGACCTGCAGGAGc < 1:1355577/150‑1 (MQ=255) tCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCTTGCCCGcaaatg > 2:1351675/1‑117 (MQ=255) tCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCTTGCCCGcaaatg < 1:1351675/122‑6 (MQ=255) tCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCgg < 1:1896505/150‑1 (MQ=255) cGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCTTGCCCGcaaatg > 1:1625904/1‑99 (MQ=255) cGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCTTGCCCGcaaatg < 2:1625904/104‑6 (MQ=255) gCCAATACGGCGAAGAAGGTACCCCACCGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCt < 1:1551321/150‑1 (MQ=255) ggCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAg > 1:978079/1‑150 (MQ=255) ggCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAg < 2:2383445/150‑1 (MQ=255) ggCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAg > 2:1435435/1‑150 (MQ=255) ggTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCACCTGCAACGGTCGCGAAGACCTGCACGAACGGGCTTGCCCGCGAAAAGGACCTACCTGTTGACACCTCTATCCAGGTCGCCtgc > 2:1134314/1‑148 (MQ=255) cAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAAc < 1:1221667/67‑1 (MQ=255) cAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAAc > 2:1221667/1‑67 (MQ=255) cAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATc > 1:1085376/1‑131 (MQ=255) cAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATc < 2:1085376/131‑1 (MQ=255) cAGCCAATCTTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAgtgcgt < 1:468332/150‑1 (MQ=255) cAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAgtgcgt < 1:468628/150‑1 (MQ=255) cAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAg > 1:2055238/1‑150 (MQ=255) ggggCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGTCCTGCAGGGGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGTCTGCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCAc < 1:1134314/150‑1 (MQ=255) ggggCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCAc < 2:2235362/150‑1 (MQ=255) gCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCggg > 1:2404712/1‑56 (MQ=255) gCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCggg < 2:2404712/56‑1 (MQ=255) | AGCCCCAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCAC > NC_002947/6027807‑6028087 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |