Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 6,044,296 A→G 7.3% S350S (AGT→AGC)  PP_5297 ← amino acid transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029476,044,2960AG 7.3% 313.0 / 11.0 110S350S (AGT→AGC) PP_5297amino acid transporter
Reads supporting (aligned to +/- strand):  ref base A (44/57);  new base G (4/4);  total (48/62)
Fisher's exact test for biased strand distribution p-value = 7.29e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.27e-01

Only 100 of 114 total aligned reads displayed.

CGGCCAGGCCGGCGCAGATGGTGGCATAGCGCGGCGTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGTGGCGATGGCGGT  >  NC_002947/6044148‑6044445
                                                                                                                                                     |                                                                                                                                                     
cGGCCAGGCCGGCGCAGATGGTGGCATAGCGCGGCGTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTAc                                                                                                                                                      <  2:2012769/150‑1 (MQ=255)
 ggCCAGGCCGGCGCAGATGGTGGCATAGCGCGGCGTTTGCGAGGGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAGCGCAAGGACGA‑GGAGTGTCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTAcg                                                                                                                                                     <  2:1531828/150‑2 (MQ=255)
    cAGGCCGGCGCAGATGGTGGCATAGCGCGGCGTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGc                                                                                                                                                  <  2:1834848/150‑1 (MQ=255)
      ggCCGGCGCAGATGGTGGCATAGCGCGGCGTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCa                                                                                                                                                <  2:130915/150‑1 (MQ=255)
            cgcAGATGGTGGCATAGCGCGGCGTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACgg                                                                                                                                          <  2:2370506/150‑1 (MQ=255)
             gcAGATGGTGGCATAGCGCGGCGTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTGCTGGCCAGTACGGc                                                                                                                                         <  1:941171/150‑1 (MQ=255)
                gATGGTGGCATAGCGCGGCGTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGAt                                                                                                                                      <  1:1646194/150‑1 (MQ=255)
                gATGGTGGCATAGCGCGGCGTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGAAcaaagaa                                                                                                                                      <  2:2181054/150‑7 (MQ=255)
                              gcggcgTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCg                                                                                                                        >  1:17267/1‑150 (MQ=255)
                                ggcgTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGcc                                                                                                                      >  2:1485857/1‑150 (MQ=255)
                                   gTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGc                                                                                                                   >  1:2236763/1‑150 (MQ=255)
                                        cGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGccc                                                                                                              >  1:1998205/1‑150 (MQ=255)
                                         gAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGcccc                                                                                                             >  1:2439206/1‑150 (MQ=255)
                                         gAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGcccc                                                                                                             >  1:1284509/1‑150 (MQ=255)
                                             gcgGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCCGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGa                                                                                                         <  2:2180632/150‑1 (MQ=255)
                                               gggCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGACAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGccc                                                                                                       <  1:1495302/150‑1 (MQ=255)
                                                 gCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGTCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCgg                                                                                                     >  2:1614811/1‑150 (MQ=255)
                                                 gCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCgg                                                                                                     >  2:527393/1‑150 (MQ=255)
                                                   aGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGggc                                                                                                   <  1:1402472/150‑1 (MQ=255)
                                                       acTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTa                                                                                                                                                       <  1:753407/94‑1 (MQ=255)
                                                       acTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTa                                                                                                                                                       >  2:753407/1‑94 (MQ=255)
                                                        cTGGCGAACGTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGggccggcc                                                                                              <  2:172400/150‑1 (MQ=255)
                                                         tGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCa                                                                                             <  2:2003118/150‑1 (MQ=255)
                                                          ggCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAg                                                                                            <  1:2358700/150‑1 (MQ=255)
                                                          ggCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAg                                                                                            >  2:587870/1‑150 (MQ=255)
                                                             gAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTg                                                                                         <  1:195449/150‑1 (MQ=255)
                                                             gAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTg                                                                                         >  1:1170763/1‑150 (MQ=255)
                                                             gAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTg                                                                                         >  2:1724838/1‑150 (MQ=255)
                                                              aaCTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTgg                                                                                        <  1:314267/150‑1 (MQ=255)
                                                                 ttCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCa                                                                                     >  1:1873732/1‑150 (MQ=255)
                                                                 ttCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCa                                                                                     >  1:129007/1‑150 (MQ=255)
                                                                 ttCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCa                                                                                     >  1:1507515/1‑150 (MQ=255)
                                                                    tGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCa                                                                                     >  1:1824939/1‑147 (MQ=255)
                                                                     gCGGTACCGCACCGTAATAACCCATGGCCAACAGGGCG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTTGCCAGCACGGCGAGGGACATCAGGATCGCCAGCTGCCCCATGACCGGGCCGGCTAGGTGGGCAAAGa                                                                                 <  2:2182735/150‑1 (MQ=255)
                                                                       ggTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCAACCTGGCCAGCACGGTCATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACg                                                                               <  1:1485857/150‑1 (MQ=255)
                                                                           ccGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTtct                                                                           >  2:1585620/1‑150 (MQ=255)
                                                                           ccGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTtct                                                                           >  2:420482/1‑150 (MQ=255)
                                                                           ccGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTtct                                                                           >  2:1585705/1‑150 (MQ=255)
                                                                            cGCACCGTAATAACCCATGGCCAACAGGTTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTtctc                                                                          <  1:959330/150‑1 (MQ=255)
                                                                            cGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTtctc                                                                          <  1:1910241/150‑1 (MQ=255)
                                                                            cGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTtctc                                                                          <  2:17267/150‑1 (MQ=255)
                                                                             gccccGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTcc                                                                         <  1:211731/147‑1 (MQ=255)
                                                                               aCCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTg                                                                       >  2:1900776/1‑150 (MQ=255)
                                                                                     ataaCCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATgcg                                                                 >  2:1673941/1‑150 (MQ=255)
                                                                                        aCCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCTGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCgg                                                              <  2:1284509/150‑1 (MQ=255)
                                                                                        aCCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCgg                                                              >  2:255470/1‑150 (MQ=255)
                                                                                        aCCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCgg                                                              <  1:1019383/150‑1 (MQ=255)
                                                                                          ccATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGgt                                                            >  2:2280879/1‑150 (MQ=255)
                                                                                          ccATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGgt                                                            >  2:911024/1‑150 (MQ=255)
                                                                                             tGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCg                                                                                                                  >  2:1942502/1‑93 (MQ=255)
                                                                                             tGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCg                                                                                                                  <  1:1942502/93‑1 (MQ=255)
                                                                                               gCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTc                                                       >  2:362072/1‑150 (MQ=255)
                                                                                                ccAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCGGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGggc                                                                                                   >  2:2064045/1‑105 (MQ=255)
                                                                                                ccAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCGGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGggc                                                                                                   <  1:2064045/105‑1 (MQ=255)
                                                                                                     aGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTgg                                                                                        <  2:1622185/111‑1 (MQ=255)
                                                                                                     aGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTgg                                                                                        >  1:1622185/1‑111 (MQ=255)
                                                                                                         gg‑cgcgcCGGCGCCAGGAAGGTGTACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGAc                                             <  2:1998205/149‑1 (MQ=255)
                                                                                                                ccGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGttt                                       <  2:167764/150‑1 (MQ=255)
                                                                                                                 cGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTc                                      >  2:1041654/1‑150 (MQ=255)
                                                                                                                  ggCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCa                                     <  1:1041654/150‑1 (MQ=255)
                                                                                                                   gcgcCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCAc                                    >  2:658567/1‑150 (MQ=255)
                                                                                                                   gcgcCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTNCAc                                    <  2:1507515/150‑1 (MQ=255)
                                                                                                                    cgcCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACt                                   <  2:915898/150‑1 (MQ=255)
                                                                                                                       cACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCgg                                                              <  2:2253015/120‑1 (MQ=255)
                                                                                                                       cACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTACTGGATGCGCgg                                                              >  1:2253015/1‑120 (MQ=255)
                                                                                                                         cGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATAc                              >  2:113866/1‑150 (MQ=255)
                                                                                                                         cGAAGGGGGGGTGGAGGGGCGCCGCGGGAGGGGCCGGCGCGGCGATGGACGTCAGGATCGGCAGGGGGGCGGTGGCCGGGCCGGGCAGGTGGGCAAAGAGGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATAc                              <  1:587870/150‑1 (MQ=255)
                                                                                                                          gAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCgg                                                              >  2:1585427/1‑117 (MQ=255)
                                                                                                                          gAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCgg                                                              <  1:1585427/117‑1 (MQ=255)
                                                                                                                          gAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCa                                                <  1:243812/131‑1 (MQ=255)
                                                                                                                          gAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCa                                                >  2:243812/1‑131 (MQ=255)
                                                                                                                          gAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACt                                   <  2:441792/144‑1 (MQ=255)
                                                                                                                          gAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACt                                   >  1:441792/1‑144 (MQ=255)
                                                                                                                          gAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATAcc                             >  2:1003932/1‑150 (MQ=255)
                                                                                                                           aaGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCg                            <  2:1170763/150‑1 (MQ=255)
                                                                                                                           aaGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCg                            <  2:419305/150‑1 (MQ=255)
                                                                                                                                ggACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCg                            <  2:1333158/145‑1 (MQ=255)
                                                                                                                                ggACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCAAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCg                            >  1:1333158/1‑145 (MQ=255)
                                                                                                                                      cAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAg                 <  1:1159334/150‑1 (MQ=255)
                                                                                                                                         cGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGt              <  2:1903598/150‑1 (MQ=255)
                                                                                                                                           aCGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATAc                              <  2:1790515/132‑1 (MQ=255)
                                                                                                                                           aCGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATAc                              >  1:1790515/1‑132 (MQ=255)
                                                                                                                                           aCGCCGCAGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGTgg            >  1:2158844/1‑150 (MQ=255)
                                                                                                                                            catcgccgTGCTGGCCAGTACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGTGGc           >  1:2271221/4‑150 (MQ=255)
                                                                                                                                             atcgccgTGCTGGCCAGTACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTgg                                                                                        >  2:140607/3‑72 (MQ=38)
                                                                                                                                             atcgccgTGCTGGCCAGTACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTgg                                                                                        <  1:140607/70‑1 (MQ=38)
                                                                                                                                              tcgccgTGCTGGCCAGTACGGCGATGGACATCAGGATCTCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCt                                                                        <  1:662949/86‑1 (MQ=39)
                                                                                                                                              tcgccgTGCTGGCCAGTACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCt                                                                        >  2:662949/2‑87 (MQ=39)
                                                                                                                                               cgccgTGCTGGCCAGTACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAg                                                     <  1:789114/105‑1 (MQ=255)
                                                                                                                                               cgccgTGCTGGCCAGTACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAg                                                     >  2:789114/1‑105 (MQ=255)
                                                                                                                                               cgccgTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAgg                <  2:1091858/142‑1 (MQ=255)
                                                                                                                                               cgccgTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAgg                >  1:1091858/1‑142 (MQ=255)
                                                                                                                                                 ccgTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCa                  >  2:1171426/1‑138 (MQ=255)
                                                                                                                                                 ccgTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCa                  <  1:1171426/138‑1 (MQ=255)
                                                                                                                                                 ccgTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGTGGCGATgg      <  1:1724838/150‑1 (MQ=255)
                                                                                                                                                  cgTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGTGGCGATGGc     <  2:129007/150‑1 (MQ=255)
                                                                                                                                                  cgTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGTGGCGATGGc     <  2:129069/150‑1 (MQ=255)
                                                                                                                                                   gTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGTGGCGATGGCg    <  2:1081348/150‑1 (MQ=255)
                                                                                                                                                     aCTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGTGGCGATGGCGGt  <  1:2280879/150‑1 (MQ=255)
                                                                                                                                                     aCTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGTGGCGATGGCGGt  <  1:420482/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
CGGCCAGGCCGGCGCAGATGGTGGCATAGCGCGGCGTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTG‑CGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGTGGCGATGGCGGT  >  NC_002947/6044148‑6044445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑