BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	6,044,305	C→T	7.3%	V347V (GTG→GTA)	PP_5297 ←	amino acid transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	6,044,305	0	C	T	7.3%	313.9 / 11.3	110	V347V (GTG→GTA)	PP_5297	amino acid transporter
Reads supporting (aligned to +/- strand): ref base C (45/56); new base T (4/4); total (49/61)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.24e-01

Only 100 of 110 total aligned reads displayed.

CGCAGATGGTGGCATAGCGCGGCGTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGTGGCGATGGCGGTGAACAG  >  NC_002947/6044160‑6044451

cgcAGATGGTGGCATAGCGCGGCGTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACgg                                                                                                                                                <  2:2370506/150‑1 (MQ=255)

 gcAGATGGTGGCATAGCGCGGCGTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTGCTGGCCAGTACGGc                                                                                                                                               <  1:941171/150‑1 (MQ=255)

    gATGGTGGCATAGCGCGGCGTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTCCTGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGAt                                                                                                                                            <  1:2233035/150‑1 (MQ=255)

    gATGGTGGCATAGCGCGGCGTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGAt                                                                                                                                            <  1:1646194/150‑1 (MQ=255)

    gATGGTGGCATAGCGCGGCGTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGAAcaaagaa                                                                                                                                            <  2:2181054/150‑7 (MQ=255)

             aTAGCGCGGCGTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAg                                                                                                                                   >  2:2035090/1‑150 (MQ=255)

                  gcggcgTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCg                                                                                                                              >  1:17267/1‑150 (MQ=255)

                    ggcgTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGcc                                                                                                                            >  2:1485857/1‑150 (MQ=255)

                       gTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGc                                                                                                                         >  1:2236763/1‑150 (MQ=255)

                            cGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGccc                                                                                                                    >  1:1998205/1‑150 (MQ=255)

                             gAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGcccc                                                                                                                   >  1:2439206/1‑150 (MQ=255)

                             gAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGcccc                                                                                                                   >  1:1284509/1‑150 (MQ=255)

                                 gcgGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCCGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGa                                                                                                               <  2:2180632/150‑1 (MQ=255)

                                   gggCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGACAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGccc                                                                                                             <  1:1495302/150‑1 (MQ=255)

                                     gCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGTCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCgg                                                                                                           >  2:1614811/1‑150 (MQ=255)

                                     gCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCgg                                                                                                           >  2:527393/1‑150 (MQ=255)

                                             tGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCa                                                                                                   <  2:2003118/150‑1 (MQ=255)

                                             tGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCa                                                                                                   <  2:2428485/150‑1 (MQ=255)

                                              ggCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAg                                                                                                  >  2:587870/1‑150 (MQ=255)

                                              ggCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAg                                                                                                  <  1:2358700/150‑1 (MQ=255)

                                                 gAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTg                                                                                               >  2:1724838/1‑150 (MQ=255)

                                                 gAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTg                                                                                               <  1:195449/150‑1 (MQ=255)

                                                 gAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTg                                                                                               >  1:1170763/1‑150 (MQ=255)

                                                   aCTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTggg                                                                                             <  2:532390/150‑1 (MQ=255)

                                                     ttCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCa                                                                                           >  1:1873732/1‑150 (MQ=255)

                                                     ttCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCa                                                                                           >  1:129007/1‑150 (MQ=255)

                                                     ttCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCa                                                                                           >  1:129069/1‑150 (MQ=255)

                                                     ttCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCa                                                                                           >  1:1507515/1‑150 (MQ=255)

                                                        tGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCa                                                                                           >  1:1824939/1‑147 (MQ=255)

                                                        tGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCa                                                                                           <  2:1824939/147‑1 (MQ=255)

                                                         gCGGTACCGCACCGTAATAACCCATGGCCAACAGGGCGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTTGCCAGCACGGCGAGGGACATCAGGATCGCCAGCTGCCCCATGACCGGGCCGGCTAGGTGGGCAAAGa                                                                                       <  2:2182735/150‑1 (MQ=255)

                                                           ggTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCAACCTGGCCAGCACGGTCATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACg                                                                                     <  1:1485857/150‑1 (MQ=255)

                                                               ccGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTtct                                                                                 >  2:1585705/1‑150 (MQ=255)

                                                               ccGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTtct                                                                                 >  2:1585620/1‑150 (MQ=255)

                                                               ccGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTtct                                                                                 >  2:420482/1‑150 (MQ=255)

                                                                cGCACCGTAATAACCCATGGCCAACAGGTTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTtctc                                                                                <  1:959330/150‑1 (MQ=255)

                                                                cGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTtctc                                                                                <  2:17267/150‑1 (MQ=255)

                                                                cGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTtctc                                                                                <  1:1910241/150‑1 (MQ=255)

                                                                  cACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCt                                                                              <  1:305379/150‑1 (MQ=255)

                                                                   aCCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTg                                                                             >  2:1900776/1‑150 (MQ=255)

                                                                         ataaCCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATgcg                                                                       >  2:1673941/1‑150 (MQ=255)

                                                                            aCCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCTGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCgg                                                                    <  2:1284509/150‑1 (MQ=255)

                                                                            aCCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCgg                                                                    <  1:1019383/150‑1 (MQ=255)

                                                                            aCCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCgg                                                                    >  2:255470/1‑150 (MQ=255)

                                                                              ccATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGgt                                                                  >  2:911024/1‑150 (MQ=255)

                                                                              ccATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGgt                                                                  >  2:2280879/1‑150 (MQ=255)

                                                                              ccATGGCCAACAGGGTGCGCGCCGGCGCAACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGgt                                                                  >  1:910270/1‑150 (MQ=255)

                                                                                 tGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCg                                                                                                                        >  2:1942502/1‑93 (MQ=255)

                                                                                 tGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCg                                                                                                                        <  1:1942502/93‑1 (MQ=255)

                                                                                   gCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTc                                                             >  2:362072/1‑150 (MQ=255)

                                                                                    ccAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCGGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGggc                                                                                                         <  1:2064045/105‑1 (MQ=255)

                                                                                         aGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTgg                                                                                              <  2:1622185/111‑1 (MQ=255)

                                                                                         aGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTgg                                                                                              >  1:1622100/1‑111 (MQ=255)

                                                                                         aGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTgg                                                                                              <  2:1622100/111‑1 (MQ=255)

                                                                                         aGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTgg                                                                                              >  1:1622185/1‑111 (MQ=255)

                                                                                             ggcgcgcCGGCGCCAGGAAGGTGTACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGAc                                                   <  2:1998205/149‑1 (MQ=255)

                                                                                                   ccGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGttt                                             <  2:167764/150‑1 (MQ=255)

                                                                                                    cGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTc                                            >  2:1041654/1‑150 (MQ=255)

                                                                                                     ggCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCa                                           <  1:1041654/150‑1 (MQ=255)

                                                                                                      gcgcCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCAc                                          >  2:658567/1‑150 (MQ=255)

                                                                                                      gcgcCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTNCAc                                          <  2:1507515/150‑1 (MQ=255)

                                                                                                       cgcCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACt                                         <  2:915898/150‑1 (MQ=255)

                                                                                                       cgcCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACt                                         <  1:1900776/150‑1 (MQ=255)

                                                                                                          cACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCgg                                                                    <  2:2253015/120‑1 (MQ=255)

                                                                                                          cACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTACTGGATGCGCgg                                                                    >  1:2253015/1‑120 (MQ=255)

                                                                                                            cGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATAc                                    >  2:113866/1‑150 (MQ=255)

                                                                                                            cGAAGGGGGGGTGGAGGGGCGCCGCGGGAGGGGCCGGCGCGGCGATGGACGTCAGGATCGGCAGGGGGGCGGTGGCCGGGCCGGGCAGGTGGGCAAAGAGGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATAc                                    <  1:587870/150‑1 (MQ=255)

                                                                                                             gAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCgg                                                                    <  1:1585427/117‑1 (MQ=255)

                                                                                                             gAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCgg                                                                    >  2:1585427/1‑117 (MQ=255)

                                                                                                             gAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCa                                                      <  1:243812/131‑1 (MQ=255)

                                                                                                             gAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCa                                                      >  2:243812/1‑131 (MQ=255)

                                                                                                             gAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACt                                         <  2:441792/144‑1 (MQ=255)

                                                                                                             gAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACt                                         >  1:441792/1‑144 (MQ=255)

                                                                                                             gAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATAcc                                   >  2:1003932/1‑150 (MQ=255)

                                                                                                              aaGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCg                                  <  2:1170763/150‑1 (MQ=255)

                                                                                                                   ggACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCg                                  <  2:1333158/145‑1 (MQ=255)

                                                                                                                   ggACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCAAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCg                                  >  1:1333158/1‑145 (MQ=255)

                                                                                                                         cAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAg                       <  1:1159334/150‑1 (MQ=255)

                                                                                                                            cGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGt                    <  2:1903598/150‑1 (MQ=255)

                                                                                                                              aCGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATAc                                    <  2:1790515/132‑1 (MQ=255)

                                                                                                                              aCGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATAc                                    >  1:1790515/1‑132 (MQ=255)

                                                                                                                              aCGCCGCAGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGTgg                  >  1:2158844/1‑150 (MQ=255)

                                                                                                                               catcgccgTGCTGGCCAGTACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGTGGc                 >  1:2271221/4‑150 (MQ=255)

                                                                                                                                atcgccgTGCTGGCCAGTACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTgg                                                                                              >  2:140607/3‑72 (MQ=38)

                                                                                                                                atcgccgTGCTGGCCAGTACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTgg                                                                                              <  1:140607/70‑1 (MQ=38)

                                                                                                                                 tcgccgTGCTGGCCAGTACGGCGATGGACATCAGGATCTCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCt                                                                              <  1:662949/86‑1 (MQ=39)

                                                                                                                                 tcgccgTGCTGGCCAGTACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCt                                                                              >  2:662949/2‑87 (MQ=39)

                                                                                                                                  cgccgTGCTGGCCAGTACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAg                                                           <  1:789114/105‑1 (MQ=255)

                                                                                                                                  cgccgTGCTGGCCAGTACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAg                                                           >  2:789114/1‑105 (MQ=255)

                                                                                                                                  cgccgTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAgg                      >  1:1091858/1‑142 (MQ=255)

                                                                                                                                  cgccgTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAgg                      <  2:1091858/142‑1 (MQ=255)

                                                                                                                                    ccgTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCa                        <  1:1171426/138‑1 (MQ=255)

                                                                                                                                    ccgTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCa                        >  2:1171426/1‑138 (MQ=255)

                                                                                                                                     cgTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGTGGCGATGGc           <  2:129007/150‑1 (MQ=255)

                                                                                                                                     cgTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGTGGCGATGGc           <  2:129069/150‑1 (MQ=255)

                                                                                                                                      gTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGTGGCGATGGCg          <  2:1081348/150‑1 (MQ=255)

                                                                                                                                        aCTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGTGGCGATGGCGGt        <  1:2280879/150‑1 (MQ=255)

                                                                                                                                        aCTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGTGGCGATGGCGGt        <  1:420482/150‑1 (MQ=255)

                                                                                                                                              cAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGTGGCGATGGCGGTGAACAg  <  1:1585620/150‑1 (MQ=255)

                                                                                                                                              cAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGTGGCGATGGCGGTGAACAg  <  1:1585705/150‑1 (MQ=255)

CGCAGATGGTGGCATAGCGCGGCGTTTGCGAGCGCGGGCAGACACTGGCGAACTTCTGCGGTACCGCACCGTAATAACCCATGGCCAACAGGGTGCGCGCCGGCGCCACGAAGGTGGACTGCAGCGACGCCGCCGTACTGGCCAGCACGGCGATGGACATCAGGATCGCCAGCGGCCCCATGACCGGGCCGGCCAGGTGGGCAAAGACGTTCTCCTGGATGCGCGGGTTGTTCAGGCCCAGACCCGTTTCACTGATACCGGCAAACTGCAGGGTGGCGATGGCGGTGAACAG  >  NC_002947/6044160‑6044451

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`