| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 550,552 | C→G | 17.9% | intergenic (+30/‑112) | tufB → / → rpsJ | elongation factor Tu‑B/30S ribosomal protein S10 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 550,552 | 0 | C | G | 17.9% | 216.8 / 39.5 | 89 | intergenic (+30/‑112) | tufB/rpsJ | elongation factor Tu‑B/30S ribosomal protein S10 |
| Reads supporting (aligned to +/- strand): ref base C (40/33); new base G (7/9); total (47/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.81e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.12e-01 | |||||||||||
ATTCAGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAGGC > NC_002947/550406‑550698 | aTTCAGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTGAGc > 1:1673982/1‑150 (MQ=255) tCAGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCgg < 2:833563/150‑1 (MQ=255) cAGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCggg < 1:2002188/150‑1 (MQ=255) aGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTGAGCgggg < 1:2312530/150‑1 (MQ=255) aGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCgggg < 1:2027971/150‑1 (MQ=255) tGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTGAGCGGGGGtt < 2:1673982/150‑1 (MQ=255) gACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTGAGCGGGGGttt > 2:1168391/1‑150 (MQ=255) gACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGttt < 1:434709/150‑1 (MQ=255) aCTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTGAGCGGGGGtttt < 1:1229885/150‑1 (MQ=255) gTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTGAGCGGGGGttttttc < 1:1168391/150‑2 (MQ=255) ttACCCTGATTAAGTCCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTTAAGTCGGTCGTACCGTCGGCTCCGTCGTTGTTGCCAAAATCATCGTGCAGTCTCTCGACCGATGG‑AAAAAACCCCCGCTCAGCGGGGGtttttttt < 2:708601/150‑1 (MQ=21) cccTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTAtt < 1:2283921/150‑1 (MQ=255) cccTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTAtt > 2:16324/1‑150 (MQ=255) ccTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTGAGCGGGGGt > 2:1922035/1‑139 (MQ=255) ccTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTGAGCGGGGGt < 1:1922035/139‑1 (MQ=255) ccTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTg > 1:1939452/1‑150 (MQ=255) tGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTggg > 2:1219903/1‑150 (MQ=255) cAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGa < 1:2079870/150‑1 (MQ=255) aaGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTggg < 1:247977/145‑1 (MQ=255) aaGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTggg > 2:247977/1‑145 (MQ=255) aGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGtt > 1:1685634/1‑132 (MQ=255) aGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGtt < 2:1685634/132‑1 (MQ=255) cATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTaa > 2:102551/1‑150 (MQ=255) aTCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAAACCCCCGCTGAGCGGGGGttttttcaat < 1:2192404/136‑5 (MQ=25) aTCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTGAAAAAAACCCCCGCTGAGCGGGGGttttttcaat > 2:2192404/1‑132 (MQ=25) aTCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAAt > 2:1006768/1‑150 (MQ=255) gCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCTTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTgg < 1:983982/150‑1 (MQ=255) gCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTgg < 1:1756678/150‑1 (MQ=255) cAATGGAAGACGGTCTGCGCTTCGCGATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAATACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTggg < 2:843287/150‑1 (MQ=255) aaTGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTgggg > 1:175338/1‑150 (MQ=255) tGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGt < 2:2304692/133‑1 (MQ=255) tGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGt < 2:1048013/133‑1 (MQ=255) tGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGt > 1:2304692/1‑133 (MQ=255) tGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGt > 1:1048013/1‑133 (MQ=255) ggAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCg > 2:2050676/1‑150 (MQ=255) gAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGt > 2:2380649/1‑150 (MQ=255) gAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGG‑TTTTTTTATTGGGTTGACACTAATTGGGGGCGTc > 1:870794/1‑150 (MQ=255) aaGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTAtt < 1:557719/126‑1 (MQ=255) aaGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTAtt > 2:557719/1‑126 (MQ=255) aaGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTc > 1:2445122/1‑150 (MQ=255) gACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTGAGCGGGGGttt > 1:451020/1‑116 (MQ=255) gACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTGAGCGGGGGttt < 2:451020/116‑1 (MQ=255) gACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCta < 2:2445122/150‑1 (MQ=255) gACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGAAGATGCAGTGGATTGGGTTGACACTAATTGGGGGCGTCta > 2:2018894/1‑150 (MQ=37) cGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTATTCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTATTTTATTGGGTTGACACTAATTGGGGGCGTCtata < 1:2018894/150‑1 (MQ=255) tCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCtata > 2:272388/1‑147 (MQ=255) tCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCtata < 1:272388/147‑1 (MQ=255) cgcTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCAc > 2:129350/1‑150 (MQ=255) cTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAACCCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGc < 2:2013616/150‑1 (MQ=255) tGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCg < 1:16324/150‑1 (MQ=255) ggTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑CAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAg > 1:914525/1‑150 (MQ=255) gTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGt < 1:1322644/150‑1 (MQ=255) gTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGt < 2:1939452/150‑1 (MQ=255) gTCGTACCGTCGGCGCCGGCGTTGTGGCATTATTCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCTGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGt > 1:1638067/1‑150 (MQ=255) cGTACCGTCGGCGCCGGACTTGCGGCACAAGTCGTTCTTTAGTCATTCGACCGATTG‑AAAAAACCCCCGCTCAGCTGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGc < 2:622781/150‑1 (MQ=255) aCCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTc > 2:860664/1‑150 (MQ=255) gcGGCGCCGGCGTTGTGGCCAAAATCATCGAGCAATCACCCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGtt > 2:440852/2‑150 (MQ=255) gCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTc > 1:1903052/1‑150 (MQ=255) ggtcGAGTGATTACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTAATAGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATcc > 2:809660/3‑150 (MQ=255) cGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAAt < 2:1903052/150‑1 (MQ=255) taataaCTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCaa > 2:645210/1‑150 (MQ=255) aTCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCaaaa < 1:2050676/150‑1 (MQ=255) aTCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCaaaa > 2:2378262/1‑150 (MQ=255) aTCACTCGACCGATTG‑AAAAAACCCCCGATCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGCCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTGCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCaaaa > 1:1016338/1‑150 (MQ=255) tCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTACAGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAAt < 1:522719/150‑1 (MQ=255) aCTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTCTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGa < 1:2015573/127‑1 (MQ=255) aCTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTCTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGa > 2:2015573/1‑127 (MQ=255) aCCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCaaa > 1:134354/1‑150 (MQ=255) ttG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGt > 1:1030588/1‑150 (MQ=255) ttG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGt > 2:2298393/1‑150 (MQ=255) g‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGGCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTAt > 1:1157883/1‑150 (MQ=255) aaaaaaCCCCCGCTGAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCATGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCt > 1:1594927/1‑118 (MQ=255) aaaaaaCCCCCGCTGAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCATGCCTCCCTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCt < 2:1594927/118‑1 (MQ=255) aaaaaCCCCCGCTGAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCa > 2:1655849/1‑150 (MQ=255) aaaaCCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTGGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAg > 2:1658245/1‑150 (MQ=255) aaaaCCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAg > 2:767990/1‑150 (MQ=255) ccccGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCTTCTATAGAATCACGCATCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACATCCTGTAGTCTGAAATCCAATGCATAATCAGCATATCCGTATCAGGTTGa > 2:112958/1‑150 (MQ=255) ccccGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGtt < 2:531998/148‑1 (MQ=255) ccccGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGtt > 1:531998/1‑148 (MQ=255) ccccGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGa > 2:487291/1‑150 (MQ=255) ccccGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGa > 1:2194447/1‑150 (MQ=255) ccccGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGa > 1:1257745/1‑150 (MQ=255) ccccGCTCAGCGGGGG‑TTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGaa < 2:870794/150‑1 (MQ=255) cccGCTCAGCGTGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGCGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGaa < 2:1257745/150‑1 (MQ=255) cccGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCTTCGATAGAATCACACCTCCTTTTATCGGGCGTAGTTCGTCCGTTGGGAACAGCCTGTAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGaa > 2:336452/1‑150 (MQ=255) cccGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGaa < 1:1219903/150‑1 (MQ=255) ccGCTGAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAg < 1:1655849/150‑1 (MQ=255) ccGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAg < 1:809660/150‑1 (MQ=255) ccGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAg < 2:403548/150‑1 (MQ=255) gCTNAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCACTGCAAAATCAGCAAATCCGTATCAGGTTGAAGGc > 2:1498049/1‑150 (MQ=255) | ATTCAGATGACTGTTACCCTGATCAAGACCATCGCAATGGAAGACGGTCTGCGCTTCGCTATCCGTGAAGGCGGTCGTACCGTCGGCGCCGGCGTTGTGGCCAAAATCATCGAGTAATCACTCGACCGATTG‑AAAAAACCCCCGCTCAGCGGGGGTTTTTTTTATTGGGTTGACACTAATTGGGGGCGTCTATAGAATCACGCCTCCTTTTAGCGGGCGTAGTGCGTCCGTTGGGAACAGCCTGGAGTCTGAAATCCAATGCAAAATCAGCAAATCCGTATCAGGTTGAAGGC > NC_002947/550406‑550698 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |