BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	931,500	G→T	5.3%	L4709I (CTC→ATC)	PP_0806 ←	surface adhesion protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	931,500	0	G	T	5.3%	327.8 / 3.3	104	L4709I (CTC→ATC)	PP_0806	surface adhesion protein
Reads supporting (aligned to +/- strand): ref base G (44/54); new base T (3/3); total (47/57)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 105 total aligned reads displayed.

TGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATCGGCCAGCACCACTTGCACCTGTTGGCCGTTGGCCTGAGGCGA  >  NC_002947/931352‑931644

ggggTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAgg                                                                                                                                                 <  2:1044405/149‑1 (MQ=255)

  ggTGAAGCTGAGCAGCTCGGCGTTGCCCGGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGt                                                                                                                                               <  1:382803/150‑1 (MQ=255)

            agcagcTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGATGGTGTCACCCTCa                                                                                                                                     <  1:1165919/150‑1 (MQ=255)

            agcagcTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCa                                                                                                                                     >  1:906288/1‑150 (MQ=255)

              cagcTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCAcc                                                                                                                                   >  2:1734734/1‑150 (MQ=255)

               agcTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCg                                                                                                                                  <  2:2408299/150‑1 (MQ=255)

               agcTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGAAGGTAGAGCTGCCGCTTTCCTCGCCTGCCGTGTTGGTCACTGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCg                                                                                                                                  <  2:866045/150‑1 (MQ=255)

                 cTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGa                                                                                                                                >  1:2108371/1‑150 (MQ=255)

                  tCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGaa                                                                                                                               >  1:1969329/1‑150 (MQ=255)

                  tCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGCCGCTGCCGAGTTCCTCGCCTGCCGGGTTGGTCACGTCAACCCGTCCGCCCACTTCGCCGCGGCCGGCGAGGCTCACACCACCACCggca                                                                                                                               >  2:316087/1‑148 (MQ=255)

                   cGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGaaa                                                                                                                              <  2:1557262/150‑1 (MQ=255)

                      cGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACgg                                                                                                                           >  2:1552696/1‑150 (MQ=255)

                       gTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGc                                                                                                                          >  1:1917776/1‑150 (MQ=255)

                       gTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGCGACACCATCACCGGAAACGGc                                                                                                                          <  1:266903/150‑1 (MQ=255)

                          gCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAg                                                                                                                       >  1:2045089/1‑150 (MQ=255)

                            ccAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGtt                                                                                                                     >  2:292842/1‑150 (MQ=255)

                               gTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGc                                                                                                                  <  2:2383692/150‑1 (MQ=255)

                                tGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGcc                                                                                                                 <  2:464195/150‑1 (MQ=255)

                                    gggCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGt                                                                                                             >  1:1846133/1‑150 (MQ=255)

                                    gggCGCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGGCGTGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGt                                                                                                             <  1:404864/150‑1 (MQ=255)

                                         cAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGa                                                                                                        <  1:1898174/150‑1 (MQ=255)

                                           gCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATg                                                                                                      >  1:2148135/1‑150 (MQ=255)

                                            cGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGGGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATgg                                                                                                     <  2:1596557/150‑1 (MQ=255)

                                                  ggTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGgtgt                                                                                               <  1:2051842/150‑1 (MQ=255)

                                                  ggTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGgtgt                                                                                               <  1:1009536/150‑1 (MQ=255)

                                                  ggTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTCCTGGATGCACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGgtgt                                                                                               >  1:1331244/1‑150 (MQ=255)

                                                      acgTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCTGGTGCCGATGGCGgtgtcaac                                                                                           <  1:1902646/148‑5 (MQ=255)

                                                          ggCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCgg                                                                                       <  2:2108371/150‑1 (MQ=255)

                                                          ggCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCgg                                                                                       <  2:1969329/150‑1 (MQ=255)

                                                          ggCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCgg                                                                                       <  1:502941/150‑1 (MQ=255)

                                                           gCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTTGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCggg                                                                                      <  1:2076158/150‑1 (MQ=255)

                                                           gCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCgg                                                                                       <  2:2118842/149‑1 (MQ=255)

                                                           gCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCgg                                                                                       >  1:2118842/1‑149 (MQ=255)

                                                                tGGCAGCGACGGTGGCGTTGATGATTTCCTAGCCTGCCCGCTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCgg                                                                                 <  2:624664/150‑1 (MQ=255)

                                                                  gCATTGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACg                                                                                                                            <  1:1142928/105‑1 (MQ=255)

                                                                  gCATTGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACg                                                                                                                            >  2:1142928/1‑105 (MQ=255)

                                                                  gCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTg                                                                               >  1:465712/1‑150 (MQ=255)

                                                                   cATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGacac                                                                                                                                          >  2:181620/1‑90 (MQ=255)

                                                                   cATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGacac                                                                                                                                          <  1:181620/90‑1 (MQ=255)

                                                                   cATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGa                                                                              <  2:2373529/150‑1 (MQ=255)

                                                                    aTCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGAt                                                                             >  1:1784282/1‑150 (MQ=255)

                                                                     tCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGGCAGTTCGCCGGGTGCCGATGGCGGTGTGGTAGCGGGCGCGGTGATa                                                                            >  1:1696976/1‑150 (MQ=255)

                                                                     tCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATa                                                                            <  2:850732/150‑1 (MQ=255)

                                                                        aCGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAgcg                                                                         >  2:275083/1‑150 (MQ=255)

                                                                            tGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTgg                                                                     <  1:1906272/150‑1 (MQ=255)

                                                                               cgcTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTggcgg                                                                  <  2:2047938/150‑1 (MQ=255)

                                                                                gcTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCg                                                                                                   >  1:968859/1‑116 (MQ=255)

                                                                                gcTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCg                                                                                                   <  2:968859/116‑1 (MQ=255)

                                                                                 cTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGGGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCa                                                                <  2:209879/150‑1 (MQ=255)

                                                                                    ccGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGa                                                                              <  1:2046660/133‑1 (MQ=255)

                                                                                    ccGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGa                                                                              >  2:2046660/1‑133 (MQ=255)

                                                                                      gATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTg                                                           >  2:2014147/1‑150 (MQ=255)

                                                                                      gATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTg                                                           <  2:2148135/150‑1 (MQ=255)

                                                                                         ttCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGtt                                                        <  2:465712/150‑1 (MQ=255)

                                                                                         tgccgcGCCTGCCGGGTTGGTGACTGTAACCCTGGCGCCCACGTCGCCGCGGGCGGGGCGGGGGACACCGGCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGtt                                                        <  2:108978/145‑1 (MQ=255)

                                                                                            cTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTtgcc                                                     <  2:1784282/150‑1 (MQ=255)

                                                                                            cTCGCCTGCCGGGTTGGTCACGGTAACCCGGGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGAATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTtgcc                                                     >  2:1411370/1‑150 (MQ=255)

                                                                                             tCGCCTGCCGGGTTGGTCACGGTAACCCTTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTtgcct                                                    >  1:184304/1‑150 (MQ=255)

                                                                                             tCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTTGTATCGGGTGCGGTGATAGCGCTGGCGGCAGATTGGTtgcct                                                    <  1:292842/150‑1 (MQ=255)

                                                                                             tCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTa                                                                                           <  1:2158876/111‑1 (MQ=255)

                                                                                             tCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTa                                                                                           >  2:2158876/1‑111 (MQ=255)

                                                                                             tCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCt                                                                       <  1:800756/131‑1 (MQ=255)

                                                                                             tCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCt                                                                       >  2:800756/1‑131 (MQ=255)

                                                                                             tCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTtgcct                                                    >  2:1976408/1‑150 (MQ=255)

                                                                                             tCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTtgcct                                                    <  1:104778/150‑1 (MQ=255)

                                                                                             tCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTtgcct                                                    >  1:2280266/1‑150 (MQ=255)

                                                                                             ccGCCTGCCGGGTTGGTAAAGGTGACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACAGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTtgcct                                                    <  1:1306024/149‑1 (MQ=255)

                                                                                               gCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCAcc                                                                                                                                   <  2:247986/69‑1 (MQ=255)

                                                                                               gCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCAcc                                                                                                                                   >  1:247986/1‑69 (MQ=255)

                                                                                                  tGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCGGACTGGTTGCCTGCCGc                                               >  1:141952/1‑150 (MQ=255)

                                                                                                  tGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGc                                               >  1:2095213/1‑150 (MQ=255)

                                                                                                      gggTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATCg                                           <  1:2056101/150‑1 (MQ=255)

                                                                                                             tCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATCGGCCAGca                                    >  2:1390111/1‑150 (MQ=255)

                                                                                                               aCGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATCGGCCa                                       >  1:1769277/1‑145 (MQ=255)

                                                                                                               aCGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATCGGCCa                                       <  2:1769277/145‑1 (MQ=255)

                                                                                                                 ggTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCTGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATCGGCCAGcaccac                                <  2:1846133/150‑1 (MQ=255)

                                                                                                                  gTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATCGGCCAGCACCACt                               <  1:2347203/150‑1 (MQ=255)

                                                                                                                  gTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATCGGCCAGCACCACt                               >  2:974123/1‑150 (MQ=255)

                                                                                                                   tAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCa                                                                >  1:1549384/1‑116 (MQ=255)

                                                                                                                   tAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCa                                                                <  2:1549384/116‑1 (MQ=255)

                                                                                                                   tAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGc                                               >  2:480698/1‑133 (MQ=255)

                                                                                                                   tAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGc                                               <  1:480698/133‑1 (MQ=255)

                                                                                                                      cccGTGCGCCCCGTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATCGGCCAGCACCACTTGCa                           <  1:958301/150‑1 (MQ=255)

                                                                                                                       ccGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATCGGCCAGCACCACTTGCAc                          >  2:1089066/1‑150 (MQ=255)

                                                                                                                       ccGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATCGGCCAGCACCACTTGCAc                          <  2:906288/150‑1 (MQ=255)

                                                                                                                         gTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATCGGCCAGCACCACTTGCACCt                        <  1:2416904/150‑1 (MQ=255)

                                                                                                                                cACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATAGACAATATTGACTTGCGCCTgttggct                 <  2:2434889/150‑2 (MQ=255)

                                                                                                                                 aCTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCTGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATCGGCCAGCACCACTTGCACCTgttggccg                <  1:516190/150‑1 (MQ=255)

                                                                                                                                 aCTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGtt                                                        <  1:945089/110‑1 (MQ=255)

                                                                                                                                 aCTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGtt                                                        >  2:945089/1‑110 (MQ=255)

                                                                                                                                 aCTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTCGCAACGGGGGCGGTCATAGCCCTGGCGGCAGCCGCGTCGCCTGCCGCATCGGCCAGCACCACTTGCCCCGgttgcccc                >  2:193548/1‑149 (MQ=255)

                                                                                                                                        cgcgGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATCGGCCAGCACCACTTGCACCTGTTGGCCGTTGGCCt         >  1:1400672/1‑150 (MQ=255)

                                                                                                                                          cgGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATCGGCCAGCACCACTTGCACCTGTTGGCCGTTGGCCTGa       <  1:275083/150‑1 (MQ=255)

                                                                                                                                              cGGTGATGGTGTCACCCTCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATCGGCCAGCACCACTTGCACCTGTTGGCCGTTGGCCTGAGGCg   >  2:655905/1‑150 (MQ=255)

                                                                                                                                               ggTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATCGGCCAGCACCACTTGCACCTGTTGGCCGTTGGCCTGAGGCGa  >  2:1622196/1‑150 (MQ=255)

                                                                                                                                               ggTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATCGGCCAGCACCACTTGCACCTGTTGGCCGTTGGCCTGAGGCGa  >  2:1969761/1‑150 (MQ=255)

                                                                                                                                                gTGATGGTGTCACCCTCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGa                                                                              <  1:2070444/73‑1 (MQ=38)

                                                                                                                                                gTGATGGTGTCACCCTCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGa                                                                              >  2:2070444/1‑73 (MQ=38)

                                                                                                                                                gTGAGGGTGACCCCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATCGGCCAGCACCACTTGCAc                          >  2:700309/1‑125 (MQ=255)

                                                                                                                                                gTGAGGGGGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATCGGCCAGCACCACTTGCAc                          <  1:700309/125‑1 (MQ=255)

TGGGTGAAGCTGAGCAGCTCGGCGTTGCCCAGTGCCGGGCTCAGCGTGATGGTGAAGTGGCCACTGGCATCGACGGTGGCGCTGCCGATTTCCTCGCCTGCCGGGTTGGTCACGGTAACCCGTGCGCCCACTTCGCCGCGGCCGGTGAGGGTGACACCATCACCGGAAACGGCCAGTTCGCCGGGTGCCGATGGCGGTGTGGTATCGGGTGCGGTGATAGCGCTGGCGGCAGACTGGTTGCCTGCCGCATCGGCCAGCACCACTTGCACCTGTTGGCCGTTGGCCTGAGGCGA  >  NC_002947/931352‑931644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`