BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	944,829	A→T	6.3%	S266T (TCG→ACG)	PP_0806 ←	surface adhesion protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	944,829	0	A	T	6.3%	329.3 / 10.7	111	S266T (TCG→ACG)	PP_0806	surface adhesion protein
Reads supporting (aligned to +/- strand): ref base A (44/60); new base T (3/4); total (47/64)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.26e-01

Only 100 of 111 total aligned reads displayed.

GAGATATTGCCAGCCGCGTCTGCGGCGCTGATCTCCAGGGCCTGGCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCGAGACATTACCGGCGGCGTCAGTCAGGGTGACATCAAGG  >  NC_002947/944681‑944974

gagaTATTGCCAGCCGCGTCTGCGGCGCTGATCTCCAGGGCCTGGCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAg                                                                                                                                                  >  1:1930926/1‑150 (MQ=255)

    tatTGCCAGCCGCGTCTGCGGCGCTGATCTCCAGGGCCTGGCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCgg                                                                                                                                              <  1:2145572/150‑1 (MQ=255)

    agttGCCAGCCGCGTCTGCGGCGCTGATCTCCAGGGCCTGGCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCgg                                                                                                                                              <  2:1942337/148‑1 (MQ=255)

      ttGCCAGCCGCGTCTGCGGCGCTGATCTCCAGGGCCTGGCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGc                                                                                                                                            >  1:285103/1‑150 (MQ=255)

         ccAGCCGCGTCTGCGGCGCTGATCTCCAGGGCCTGGCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCg                                                                                                                                         >  2:1895594/1‑150 (MQ=255)

            gCCGCGTCTGCGGCGCTGATCTCCAGGGCCTGGCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCa                                                                                                                                      <  1:1273387/150‑1 (MQ=255)

               gcgTCTGCGGCGCTGATCTCCAGGGCCTGGCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGTGCCGAGCGCGGCTCGa                                                                                                                                   <  2:1172379/150‑1 (MQ=255)

               gcgTCTGCGGCGCTGATCTCCAGGGCCTGGCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCA‑AGGAATACGCCACCTGCGCCTCGCACGGAAACCGTCGTGCCGAGCCCGGCTCGa                                                                                                                                   <  1:1995459/150‑1 (MQ=255)

                 gTCTGCGGCGCTGATCTCCAGGGCCTGGCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGTGCCGAGCCCGGCTCGAcg                                                                                                                                 <  1:260901/150‑2 (MQ=255)

                  tCTGCGGCGCTGATCTCCAGGGCCTGGCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCg                                                                                                                                <  1:2209504/150‑1 (MQ=255)

                     gcggcgCTGATCTCCAGGGCCTGGCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATCCGCCCCCTGCCCCCCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTa                                                                                                                             <  1:1232638/150‑1 (MQ=255)

                      cggcgCTGATCTCCAGGGCCTGGCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTaa                                                                                                                            >  1:2417501/1‑150 (MQ=255)

                          gcTGATCTCCAGGGCCTGGCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACTACCGGTAAGGgt                                                                                                                        <  2:2180492/150‑1 (MQ=255)

                          gcTGATCTCCAGGGCCTGGCCGTCGCTTTGTCGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCCAGCCGGGCTCGGCACGACCGGTAAGGgt                                                                                                                        <  2:1250389/150‑1 (MQ=255)

                            tGATCTCCAGGGCCTGGCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGgtgt                                                                                                                      <  2:1576987/150‑1 (MQ=255)

                             gATCTCCAGGGCCTGGCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGtt                                                                                                                     <  2:1118466/150‑1 (MQ=255)

                               tctcCAGGGCCTGGCCGTCGCTTTGTGGCGGGTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTAc                                                                                                                   >  2:2212500/1‑150 (MQ=255)

                                 tcCAGGGCCTGGCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTAccc                                                                                                                 >  1:1823720/1‑150 (MQ=255)

                                 tcCAGGGCCTGGCCGTCGCTTTGTGGCGGTGGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCGATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTAccc                                                                                                                 >  1:1775105/1‑150 (MQ=255)

                                  ccAGGGCCTGGCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCt                                                                                                                <  2:264337/150‑1 (MQ=255)

                                  ccAGGGCCTGGCCGTCGCTTTGTGGCGCTATCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCt                                                                                                                >  1:63061/1‑150 (MQ=255)

                                   cAGGGCCTGGCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGTGCCGAGCCCGGc                                                                                                                                       <  1:1538063/126‑1 (MQ=255)

                                   cAGGGCCTGGCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGTGCCGAGCCCGGc                                                                                                                                       >  2:1538063/1‑126 (MQ=255)

                                            gCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGGACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGAt                                                                                                      <  2:184470/150‑1 (MQ=255)

                                            gCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGAt                                                                                                      <  2:237022/150‑1 (MQ=255)

                                            cccGTCGCTTTGGGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCA‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGAt                                                                                                      <  2:1158109/149‑1 (MQ=255)

                                             ccGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATa                                                                                                     <  1:908717/150‑1 (MQ=255)

                                             ccGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATa                                                                                                     <  2:1823720/150‑1 (MQ=255)

                                                 cGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCa                                                                                                 <  1:2013278/150‑1 (MQ=255)

                                                  gCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCgg                                                                                                                                              <  1:736091/104‑1 (MQ=255)

                                                  gCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCgg                                                                                                                                              >  2:736091/1‑104 (MQ=255)

                                                    tttGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGAt                                                                                                      >  1:2042905/1‑142 (MQ=255)

                                                    tttGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGAt                                                                                                      <  2:2042905/142‑1 (MQ=255)

                                                          gCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGt                                                                                                                              <  2:466318/112‑1 (MQ=255)

                                                          gCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGt                                                                                                                              >  1:466318/1‑112 (MQ=255)

                                                          gCGGTGGCAGGGTAATGCTTAACTGGCCGGCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTTTTACCCTGCTCATTGATAGCCAGgtcggtcg                                                                                        <  2:884372/150‑1 (MQ=255)

                                                            ggTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGgc                                                                                      <  1:1849144/150‑1 (MQ=255)

                                                              ttGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGgcgc                                                                                    <  2:1930926/150‑1 (MQ=255)

                                                              ttGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGgcgc                                                                                    <  2:252993/150‑1 (MQ=255)

                                                              ttGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCAACGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGgcgc                                                                                    >  1:2159800/1‑150 (MQ=255)

                                                                gCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCa                                                                                  >  2:1609506/1‑150 (MQ=255)

                                                                  aGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCCTATGTAT‑CGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAgt                                                                                <  2:63061/150‑1 (MQ=255)

                                                                   gggTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAgtg                                                                               <  2:823986/150‑1 (MQ=255)

                                                                   gggTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAgtg                                                                               <  2:285103/150‑1 (MQ=255)

                                                                    ggcaaTGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATCAGTCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGGAAGGGGGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAgtgg                                                                              >  1:1241653/4‑150 (MQ=255)

                                                                     gTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAgtggt                                                                             >  2:248409/1‑150 (MQ=255)

                                                                     gTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAgtggt                                                                             <  2:596881/150‑1 (MQ=255)

                                                                      tAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAgtggtg                                                                            <  2:2031198/150‑1 (MQ=255)

                                                                      tAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTCACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAgtggtg                                                                            <  1:115247/150‑1 (MQ=255)

                                                                          gCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGt                                                                        <  1:1895594/150‑1 (MQ=255)

                                                                            tGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGGAGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTg                                                                      >  1:288588/1‑150 (MQ=255)

                                                                            tGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTg                                                                      >  1:2224346/1‑150 (MQ=255)

                                                                             gAACTGGCCGTCCGCACCGGCCAACGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGc                                                                     <  2:2159800/150‑1 (MQ=255)

                                                                              aaCTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCg                                                                    >  1:2302903/1‑150 (MQ=255)

                                                                              aaCTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCg                                                                    >  1:2181824/1‑150 (MQ=255)

                                                                                cTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGNGTc                                                                  <  2:1505573/150‑1 (MQ=255)

                                                                                 tGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCAt                                                                                                          <  2:2199362/109‑1 (MQ=255)

                                                                                 tGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCAt                                                                                                          >  1:2199362/1‑109 (MQ=255)

                                                                                   gCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCg                                                                                                                                         <  1:1268074/76‑1 (MQ=255)

                                                                                   gCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCg                                                                                                                                         >  2:1268074/1‑76 (MQ=255)

                                                                                      gTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGc                                                                     >  1:1809974/1‑141 (MQ=255)

                                                                                      gTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGc                                                                     <  2:1809974/141‑1 (MQ=255)

                                                                                      gTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGc                                                            >  1:1012470/1‑150 (MQ=255)

                                                                                           cACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGa                                                       <  1:954807/150‑1 (MQ=255)

                                                                                            aCCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAggtcg                                                                                            <  1:1145367/112‑1 (MQ=255)

                                                                                            aCCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAggtcg                                                                                            >  2:1145367/1‑112 (MQ=255)

                                                                                             ccGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACa                                                     >  2:1887961/1‑150 (MQ=255)

                                                                                                    ccGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAg                                              >  1:1747650/1‑150 (MQ=255)

                                                                                                      gCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAATGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGgc                                            >  1:960884/1‑150 (MQ=255)

                                                                                                      gCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGgc                                            >  1:222107/1‑150 (MQ=255)

                                                                                                          tGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCg                                        >  2:2406634/1‑150 (MQ=255)

                                                                                                            ccc‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATa                                                                                                     >  2:1926247/1‑87 (MQ=255)

                                                                                                             cc‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCgaga                                     >  2:1919796/1‑150 (MQ=255)

                                                                                                             cc‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCgaga                                     >  1:1907129/1‑150 (MQ=255)

                                                                                                                 gCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCggtaatg                                  <  1:1887961/150‑7 (MQ=255)

                                                                                                                 gCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCGAGACAt                                  <  1:1919796/150‑1 (MQ=255)

                                                                                                                 gCAATACGCCACCTGCGCCACGCACGGAAACCGTCTAGCCTGGCTCGGCACGACCGGTAAGATAGTTGCACCGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCGAGACAt                                  <  1:1861437/150‑1 (MQ=255)

                                                                                                                    aTACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCAtt                                                                                                         <  2:1572225/76‑1 (MQ=255)

                                                                                                                    aTACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCAtt                                                                                                         >  1:1572225/1‑76 (MQ=255)

                                                                                                                    aTACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCGAGACATTAc                               <  2:1907129/150‑1 (MQ=255)

                                                                                                                    aTACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCGAGACATTAc                               <  2:2181824/150‑1 (MQ=255)

                                                                                                                     tACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGc                                                                                                                                       <  2:2106125/45‑1 (MQ=255)

                                                                                                                     tACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGc                                                                                                                                       >  1:2106125/1‑45 (MQ=255)

                                                                                                                      aCGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCGAGACATTACcg                             <  2:2302903/150‑1 (MQ=255)

                                                                                                                        gCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAgt                                                                                >  1:2309320/1‑97 (MQ=255)

                                                                                                                        gCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCGAGACATTACcggc                           >  2:2449054/1‑150 (MQ=255)

                                                                                                                         ccACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCGAGACATTACcggcg                          >  2:750385/1‑150 (MQ=255)

                                                                                                                             cggcgcCGCGCACGGAAACCGGCGAGCCGGGCTCGGGACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCGAGACATTACCGGCGGCgt                      <  1:860447/148‑1 (MQ=255)

                                                                                                                                cgcCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCGAGACATTACCGGCGGCgtcag                   >  1:232100/1‑150 (MQ=255)

                                                                                                                                    tCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCGAGACATTACCGGCGGCGtcagtcag               >  2:469027/1‑150 (MQ=255)

                                                                                                                                     cGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAATGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCGAGACATTACCGGCGGCGTCAGTCAgg              <  2:960884/150‑1 (MQ=255)

                                                                                                                                          ggAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCGAGACATTACCGGCGGCGTCAGTCAGGGTGAc         >  2:2122566/1‑150 (MQ=255)

                                                                                                                                             aaCCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCGAGACATTACCGGCGGCGTCAGTCAGGGTGACATc      <  2:2417501/150‑1 (MQ=255)

                                                                                                                                                cGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCGAGACATTACCGGCGGCGTCAGTCAGGGTGACATCAAg   <  1:1974334/150‑1 (MQ=255)

                                                                                                                                                cGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCGAGACATTACCGGCGGCGTCAGTCAGGGTGACATCAAg   <  1:638538/150‑1 (MQ=255)

                                                                                                                                                cGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCGAGACATTACCGGCGGCGTCAGTCAGGGTGACATCAAg   >  2:92324/1‑150 (MQ=255)

                                                                                                                                                 gTCGTGCCGAGCCCGGCTCGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCGAGACATTACCGGCGGCGTCAGTCAGGGTGACATCAAgg  >  2:1709866/1‑150 (MQ=255)

                                                                                                                                                  tCGTGCCGAGCCCGGCTCGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCa                                                           >  1:2277110/1‑92 (MQ=255)

                                                                                                                                                  tCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCGAGAc                                    <  1:2306143/115‑1 (MQ=255)

                                                                                                                                                  tCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCGAGAc                                    >  2:2306143/1‑115 (MQ=255)

GAGATATTGCCAGCCGCGTCTGCGGCGCTGATCTCCAGGGCCTGGCCGTCGCTTTGTGGCGGTTGCAGGGTAATGCTGAACTGGCCGTCCGCACCGGCCACCGCAGTGCCC‑AGCAATACGCCACCTGCGCCTCGCACGGAAACCGTCGAGCCGGGCTCGGCACGACCGGTAAGGGTGTTACCCTGCTCATTGATAGCCAGGTCGGTCGGCGCCAGTGGTGCAGTTGCGTCCGGTGCAGTGACAGCGCCAGGCGCCGAGACATTACCGGCGGCGTCAGTCAGGGTGACATCAAGG  >  NC_002947/944681‑944974

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`