Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	1,045,272	G→A	13.8%	intergenic (+42/+64)	PP_0905 → / ← PP_0906	hypothetical protein/RND family multidrug transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	1,045,272	0	G	A	13.8%	186.3 / 20.6	80	intergenic (+42/+64)	PP_0905/PP_0906	hypothetical protein/RND family multidrug transporter
Reads supporting (aligned to +/- strand):  ref base G (35/34);  new base A (5/6);  total (40/40)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.71e-01

GCGTTGCCGCGGGATGCAAAACCGCAGCAGCAGGCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAGGGTGTAGATGCACGGCAACACAAACAAGGTAAACAACGTG  >  NC_002947/1045123‑1045420                                                                                                                                                      |                                                                                                                                                      gcgTTGCCGCGGGATCCAAAACCGCAGCAGCAGGCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGAGTCCAGGGTTGCGGTCGCCGAGGTGAACCGTGCGGTAGCTGTAATAGTCAGAGGCCTCGCTATTGCgg                                                                                                                                                       <  2:1843668/150‑1 (MQ=255)   gTTGCCGCGGGATGCAAAACCGCAGCAGCAGGCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGTGATGAACGCTGGGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCgggg                                                                                                                                                     >  2:2099296/1‑150 (MQ=255)   gTTGCCGCGGGATGCAAAACCGCAGCAGCAGGCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCgggg                                                                                                                                                     >  1:587327/1‑150 (MQ=255)   gTTGCCGCGGGATGCAAAACCGCAGCAGCAGGCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCgggg                                                                                                                                                     <  1:892883/150‑1 (MQ=255)         gcgGGATGCAAAACCGCAGCAGCAGGCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCCCGCAATCGCGAGGCCTCTg                                                                                                                                               <  1:402245/150‑1 (MQ=255)         gcgGGATGCAAAACCGCAGCAGCAGGCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGGCACAGGGATGAAGCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTg                                                                                                                                               <  2:269486/150‑1 (MQ=255)           gggATGCAAAACCGCAGCAGCAGGCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGt                                                                                                                                             >  2:1871779/1‑150 (MQ=255)            ggATGCAAAACCGCAGCAGCAGGCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGtt                                                                                                                                            <  1:1528808/150‑1 (MQ=255)             gATGCAAAACCGCAGCAGCAGGCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGttt                                                                                                                                           <  1:315877/150‑1 (MQ=255)              aTGCAAAACCGCAGCAGCAGGCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGtttt                                                                                                                                          <  1:2216316/150‑1 (MQ=255)                gCAAAACCGCAGCAGCAGGCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGtttttt                                                                                                                                        <  2:1711722/150‑1 (MQ=255)                  aaaaCCGCAGCAGCAGGCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGc                                                                                                                                      <  1:367256/150‑1 (MQ=255)                  aaaaCCGCAGCAGCAGGCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTGCCGGTTTGGCCTGCGGCAAGGGTTGCGGTCACAGGGATCAACCGTGCGTTAGCTGGAAAGGCCAGAGGCCTCGCGCTTGCCGGGCCTTTGGTTTTTTGc                                                                                                                                      >  2:966958/1‑150 (MQ=255)                        gcagcagcaGGCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGc                                                                                                                                >  2:250377/1‑150 (MQ=255)                              gcagGCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGcc                                                                                                                          >  1:818354/1‑150 (MQ=255)                                agGCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGGTGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCgg                                                                                                                        >  1:1834917/1‑150 (MQ=255)                                  gCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAAAGGCCCCGCAATCGCGAGGCCtctg                                                                                                                                               >  2:2093627/1‑122 (MQ=38)                                  gCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAAAGGCCCCGCAATCGCGAGGCCTCTgg                                                                                                                                              >  1:35457/1‑126 (MQ=38)                                  gCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAAAGGCCCCGCAATCGCGAGGCCTCTgg                                                                                                                                              <  2:35457/126‑1 (MQ=38)                                  gCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAAAGGCCCCGCAATCGCGAGGCCTCTg                                                                                                                                               <  1:2093627/125‑1 (MQ=255)                                         gcgtgcCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTcgc                                                                                                              <  1:1603226/150‑1 (MQ=255)                                          cgagcCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTcgcg                                                                                                             <  2:800525/150‑1 (MQ=255)                                                    cAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGTGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAgcccgc                                                                                                   >  1:64488/1‑150 (MQ=255)                                                     aGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAgcccgcc                                                                                                  <  2:1981903/150‑1 (MQ=255)                                                      ggACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAgcccgccc                                                                                                 <  2:818354/150‑1 (MQ=255)                                                              tGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCg                                                                                         <  1:2099296/150‑1 (MQ=255)                                                              tGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCg                                                                                         <  2:889332/150‑1 (MQ=255)                                                                   ttCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCa                                                                                    >  2:1964548/1‑150 (MQ=255)                                                                   ttCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAAAGGCCCCGCAATCGCGAGGCCtc                                                                                                                                                 >  1:846492/1‑89 (MQ=37)                                                                   ttCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAAAGGCCCCGCAATCGCGAGGCCtc                                                                                                                                                 <  2:846492/90‑2 (MQ=37)                                                                    tCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGCGCAGCCCGCCCCAAGGTCGGTGCaa                                                                                   >  2:994185/1‑150 (MQ=255)                                                                     ccTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTg                                                                                                                                               <  1:787472/90‑1 (MQ=255)                                                                     ccTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTg                                                                                                                                               >  2:787472/1‑90 (MQ=255)                                                                         tttGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGAt                                                                              >  2:192906/1‑150 (MQ=255)                                                                          ttGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGAtt                                                                             <  1:2054823/150‑1 (MQ=255)                                                                             gCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCa                                                                                                         >  1:1940162/1‑119 (MQ=255)                                                                             gCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCa                                                                                                         <  2:1940162/119‑1 (MQ=255)                                                                              ccTGCGTCAAGGGTTGTGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCATAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAg                                                                         <  2:64488/150‑1 (MQ=255)                                                                              ccTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTg                                                                            >  2:247195/1‑147 (MQ=255)                                                                              ccTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTg                                                                            <  1:247195/147‑1 (MQ=255)                                                                                  cGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGc                                                                     <  2:1834917/150‑1 (MQ=255)                                                                                   gTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAg                                                                                             <  2:2304358/125‑1 (MQ=255)                                                                                   gTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAg                                                                                             >  1:2304358/1‑125 (MQ=255)                                                                                      aaGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCggg                                                                                                                                                      <  1:980679/66‑1 (MQ=255)                                                                                      aaGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCggg                                                                                                                                                      >  2:980679/1‑66 (MQ=255)                                                                                      aaGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTg                                                                 >  1:142439/1‑150 (MQ=255)                                                                                          gTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGgcgc                                                             >  2:425103/1‑150 (MQ=255)                                                                                                   acaGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGCCTTATCCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTtgt                                                    >  2:575710/1‑150 (MQ=255)                                                                                                     aGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGGCGGCCTG‑CTCGCGGGCAGCCCGCGCCAATGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTgc                                                  >  1:88799/1‑150 (MQ=255)                                                                                                     aGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTgc                                                  >  2:396414/1‑150 (MQ=255)                                                                                                      gggATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTgcg                                                 >  1:2421974/1‑150 (MQ=255)                                                                                                         aTGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCca                                              >  2:1146610/1‑150 (MQ=255)                                                                                                            aaCCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCcagca                                           >  2:764113/1‑150 (MQ=255)                                                                                                            aaCCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCcagca                                           <  1:1140418/150‑1 (MQ=255)                                                                                                            aaCCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCcagca                                           >  1:332000/1‑150 (MQ=255)                                                                                                              cccTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAgg                                         <  1:966958/150‑1 (MQ=255)                                                                                                              cccTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAgg                                         >  1:631444/1‑150 (MQ=255)                                                                                                              cccTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAgg                                         <  1:1146610/150‑1 (MQ=255)                                                                                                              cccTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCAATTGCGGGGCCTTTGGTTTTTTTCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGACTGCAGGTGCCTTGGCGCTCGCCTTGTCCGCcagcaga                                         >  2:716022/1‑149 (MQ=255)                                                                                                               ccTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAggg                                        <  1:192906/150‑1 (MQ=255)                                                                                                                cTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGATCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAGGgt                                       <  1:1871779/150‑1 (MQ=255)                                                                                                                     ttAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCTTTGTGCGCCAGCAGGGTGTAGa                                  <  1:1882521/150‑1 (MQ=255)                                                                                                                      tAGCTGGAAAAGCCAGAGGCCTCGCGATTGCTGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGCCCTCGCTTGC‑GGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAGGGTGTAGAt                                 <  1:1860753/150‑1 (MQ=255)                                                                                                                        gCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGt                                                                                           >  1:1093297/1‑90 (MQ=255)                                                                                                                        gCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGt                                                                                           <  2:1093297/90‑1 (MQ=255)                                                                                                                          tGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAGGGTGTAGATGCAc                             >  2:2149232/1‑150 (MQ=255)                                                                                                                          tGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAGGGTGTAGATGCAc                             >  1:2052606/1‑150 (MQ=255)                                                                                                                             aaaaGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAGGGTGTAGATGCACGGc                          <  2:631444/150‑1 (MQ=255)                                                                                                                                aGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAGGGTGTAGATGCACGGCAac                       <  1:425103/150‑1 (MQ=255)                                                                                                                                aGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAGGGTGTAGATGCACGGCAac                       >  2:1447329/1‑150 (MQ=255)                                                                                                                                  ccaaagGCCCCGCAATCGCGAGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAgg                                         <  2:1374161/126‑1 (MQ=255)                                                                                                                                  ccAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCgg                                                                                                            >  1:1836003/1‑63 (MQ=255)                                                                                                                                  ccAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCgg                                                                                                            <  2:1836003/63‑1 (MQ=255)                                                                                                                                  ccAAAGGCCCCGCAATCGCGAGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAgg                                         >  1:1374161/1‑130 (MQ=255)                                                                                                                                   caaagGCCCCGCAATCGCGAGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAGGGTGTAGATGc                               <  2:1209495/136‑1 (MQ=255)                                                                                                                                   caaagGCCCCGCAATCGCGAGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAGGGTGTAGATGc                               >  1:1209495/4‑139 (MQ=255)                                                                                                                                    agagGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAGGGTGTAGATGCACGGCAACacaa                   >  1:60754/1‑150 (MQ=255)                                                                                                                                     gagGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAGGGTGTAGATGCACGGCAACacaaa                  >  1:185186/1‑150 (MQ=255)                                                                                                                                     gagGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAGGGTGTAGATGCACGGCAACacaaa                  >  1:807359/1‑150 (MQ=255)                                                                                                                                        gCCTCGCGATTGCGGGGCCTTTGGTTTTTTGTGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTg                                                                 <  2:1557432/100‑1 (MQ=255)                                                                                                                                        gCCTCGCGATTGCGGGGCCTTTGGTTTTTTGTGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTg                                                                 >  1:1557432/1‑100 (MQ=255)                                                                                                                                        gCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAGGGTGTAGATGCACGGCAACacaaacaa               <  2:2396560/150‑1 (MQ=255)                                                                                                                                         ccTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAGGGTGTAGATGCACGGCAACACAAACAAg              <  1:250377/150‑1 (MQ=255)                                                                                                                                          cTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAGGGTGTAGATGCACGGCAACACAAACAAgg             >  1:1497657/1‑150 (MQ=255)                                                                                                                                          cTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAGGGTGTAGATGCACGGCAACACAAACAAgg             >  1:1777709/1‑150 (MQ=255)                                                                                                                                              cgATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAGGGTGTAGATGCACGGCAACACAAACAAGGTaaa         <  1:396414/150‑1 (MQ=255)                                                                                                                                                     ggggCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAGGGTGTAGATGCACGGCAACACAAACAAGGTAAACAACGTg  <  2:587327/150‑1 (MQ=255)                                                                                                                                                     ggggCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAGGGTGTAGATGCACGGCAACACAAACAAGGTAAACAACGTg  >  2:2413085/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                      GCGTTGCCGCGGGATGCAAAACCGCAGCAGCAGGCCCGGAGCGAGCCAGACCAGGACCTTTTGCTGTTCCTGTTTGGCCTGCGTCAAGGGTTGCGGTCACAGGGATGAACCCTGCGTTAGCTGGAAAAGCCAGAGGCCTCGCGATTGCGGGGCCTTTGGTTTTTTGCGTCTGCCTTGCCGGCCTC‑TTCGCGGGCAGCCCGCCCCAAGGTCGGTTCAAGCGATTGCAGGTGCCTTGGCGCTCGCCTTGTGCGCCAGCAGGGTGTAGATGCACGGCAACACAAACAAGGTAAACAACGTG  >  NC_002947/1045123‑1045420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑