| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,286,005 | A→C | 6.9% | intergenic (+61/+56) | PP_1123 → / ← PP_1124 | hypothetical protein/membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,286,005 | 0 | A | C | 6.9% | 291.8 / 10.3 | 109 | intergenic (+61/+56) | PP_1123/PP_1124 | hypothetical protein/membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (47/54); new base C (2/6); total (49/60) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.91e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.16e-01 | |||||||||||
Only 100 of 109 total aligned reads displayed.
TTGGTTTGACCGTTTGCAAATCCTGTTGACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGCCAGCCCCAGCAGCAGATTGACCCCCACCATCCGCCGAATGCGCCCCAGTACC > NC_002947/1285857‑1286151 | ttGGTTTGACCGTTTGCAAATCCTGTTGACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAAc < 1:674016/150‑1 (MQ=255) gTTTGACCGTTTGCAAATCCTGTTGACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGcc < 1:1147550/150‑1 (MQ=255) gACCGTTTGCAAATCCTGTTGACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTg > 1:1162006/1‑150 (MQ=255) aCCGTTTGCAAATCCTGTTGACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGc > 1:224317/1‑150 (MQ=255) ccGTTTGCAAATCCTGTTGGCGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGcc > 1:1503226/1‑150 (MQ=255) gTTTGCAAATCCTGTTGACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGccat < 1:2205875/150‑1 (MQ=255) gTTTGCAAATCCTGTTGACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCCTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGccat < 2:647672/150‑1 (MQ=255) tttGCAAATCCTGTTGACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCACCGGCGTTGccagt < 2:1759656/150‑3 (MQ=255) tttGCAAATCCTGTTGACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGACTTACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCACCGGCGTTGccagt < 1:1223305/150‑3 (MQ=255) tttGCAAATCCTGTTGACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCCCCCCACGCGCCCAATTTGGGCAGCGTTTTTCTGGGTGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCACCGGCGTTGccagt < 1:289989/150‑3 (MQ=255) gCAAATCCTGTTGACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCACCGGCGTTGccagtgtt < 2:425978/150‑6 (MQ=255) gCAAATCCTGTTGACGGGAATCTTCAATGTCATTTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGccatccat > 1:1880328/1‑150 (MQ=255) aaaTCCTGTTGACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCg < 1:177292/150‑1 (MQ=255) aaTCCTGTTGACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGt > 1:1763383/1‑150 (MQ=255) aaTCCTGTTGACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGt < 2:380394/150‑1 (MQ=255) aTCCTGTTGACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGAGGGACACTCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTg < 2:1880328/150‑1 (MQ=255) cTGTTGACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCt > 1:1394605/1‑150 (MQ=255) cTGTTGACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCt > 1:2273782/1‑150 (MQ=255) gTTGACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTcc < 1:248778/150‑1 (MQ=255) ttGACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTgttcctg < 2:937450/150‑7 (MQ=255) gACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGc < 2:1659646/150‑1 (MQ=255) gACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGc < 1:106270/150‑1 (MQ=255) gACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGc < 2:937689/150‑1 (MQ=255) cGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCtt < 1:1277661/150‑1 (MQ=255) gggAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTc > 1:867080/1‑150 (MQ=255) gggAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTc > 1:353826/1‑150 (MQ=255) gggAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTc > 1:1915930/1‑150 (MQ=255) aaTCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCAct > 2:838562/1‑150 (MQ=255) ttCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCActgctg > 1:2421573/1‑150 (MQ=255) catgtcatgtCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGAGCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTTCCATCCAGCGTGGCTCCTGCTTCACTGCTGttt < 1:789181/150‑1 (MQ=255) gtcatgtcCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCa < 2:1915930/150‑1 (MQ=255) tcatgtcCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCAc < 2:2273782/150‑1 (MQ=255) atgtcCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGc > 1:660764/1‑150 (MQ=255) atgtcCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGc > 1:1600980/1‑150 (MQ=255) atgtcCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGGGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGc > 1:1833678/1‑150 (MQ=255) atgtcCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAACGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGc > 1:770441/1‑150 (MQ=255) tgtcCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGt > 1:592985/1‑109 (MQ=255) tgtcCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGt < 2:592985/109‑1 (MQ=255) gtcCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCaa > 1:74537/1‑150 (MQ=255) tcaaTTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAAc > 2:593107/4‑150 (MQ=255) tcCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAAc > 2:1073941/1‑150 (MQ=255) ccATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACg > 2:341287/1‑150 (MQ=255) ttCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATTGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCt > 1:2129127/1‑150 (MQ=255) ccTCGTCCGCGGGAGGCGCAGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGt < 2:1723047/150‑1 (MQ=255) cTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTc < 2:2277551/150‑1 (MQ=255) cGTCCGCGGGAGGCGCCGCGGGTGAGCTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAg < 2:74537/150‑1 (MQ=255) gcgGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCt < 2:459924/140‑1 (MQ=255) gcgGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCt > 1:459924/1‑140 (MQ=255) gcgGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCAc < 1:173494/150‑1 (MQ=255) gcgGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCAc > 1:2121011/1‑150 (MQ=255) gcgGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCAc < 2:1248555/150‑1 (MQ=255) cgGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATGCGTCGGGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCAcc > 1:1743964/1‑150 (MQ=255) aGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTc < 1:341287/150‑1 (MQ=255) gcgGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACt > 1:2431984/1‑150 (MQ=255) ggTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGc < 2:705921/150‑1 (MQ=255) gAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCAc < 1:1588823/150‑1 (MQ=255) aCTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGt < 2:2215923/105‑1 (MQ=255) aCTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCg < 1:175974/150‑1 (MQ=255) gATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGTAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCa < 2:1371586/129‑1 (MQ=255) gATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCa > 1:1371586/1‑129 (MQ=255) gATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCaa < 1:1856570/150‑1 (MQ=255) aTCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCAct > 2:1272693/1‑96 (MQ=255) aTCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCAct < 1:1272693/96‑1 (MQ=255) aTCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAac > 1:1588752/1‑150 (MQ=255) aTCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAac > 1:318788/1‑150 (MQ=255) tCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCACCGGCGTTGccagt < 1:21291/74‑3 (MQ=37) tCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCACCGGCGTTGccagt > 2:21291/1‑72 (MQ=37) tGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAacgacg < 1:838562/150‑1 (MQ=255) tGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAacgacg < 2:1763383/150‑1 (MQ=255) tGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAacgacg < 2:2121011/150‑1 (MQ=255) gCAGCGTCTCTCCCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACgg < 1:2332589/150‑1 (MQ=255) cAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATTGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGc < 2:2129127/150‑1 (MQ=255) aGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGcc < 1:732293/150‑1 (MQ=255) gCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGCCa > 1:2192632/1‑150 (MQ=255) cGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACTCCTGTCAGTGCACCAGTCGCGAACTGGCCACCGCAACGACGGCCAg < 2:867080/150‑1 (MQ=255) cGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGc > 2:1330441/1‑105 (MQ=255) cGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGc < 1:1330441/105‑1 (MQ=255) gTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGCCAGc < 1:1073941/150‑1 (MQ=255) tctcGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCAc < 1:2282219/113‑1 (MQ=255) tctcGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCAc > 2:2282219/1‑113 (MQ=255) gCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGCCAGCCCcagcagca < 2:660764/150‑1 (MQ=255) cccTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGCCAGCCCCAGCAGCAGATTg > 1:1190066/1‑150 (MQ=255) cTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGCTCACCAGTCGCGAACTGGCCACCGCAACGACGGCCAGCCCCAGCAGCAGATTGAc < 2:1286733/150‑1 (MQ=255) ttGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGCCAGCCCCAGCAGCAGAtt < 2:1867333/132‑1 (MQ=255) ttGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGCCAGCCCCAGCAGCAGAtt > 1:1867333/1‑132 (MQ=255) gCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGCCAGCCCCAGCAGCAGATTGACCCCCACCATccgccgca < 2:224317/150‑3 (MQ=255) ccGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGc > 2:1077800/1‑110 (MQ=255) ccGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGc < 1:1077800/110‑1 (MQ=255) ccGCGAACACTGGCAACGCCGGTGCCATAAATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCCCCAGTCGCGAATTGGCCACCGCAACGACGGCCAGCCCCAGCAGCAGATTGACCCCCACCATCCGCCGAATg > 1:1024279/1‑150 (MQ=255) aaCACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGCCAGCCCca > 2:1726626/1‑113 (MQ=255) aaCACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGCCAGCCCca < 1:1726626/113‑1 (MQ=255) acacTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGCCAGCCCCAGCAGCAGATTGACCCCCACCATCCGCCGAATGCGcccc > 2:1807348/1‑150 (MQ=255) ggatGGCACCGGCGTTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAacgacg > 2:557166/4‑101 (MQ=255) ggatGGCACCGGCGTTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAacgacg < 1:557166/98‑1 (MQ=255) tGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGCCAGCCCCAGCAGCAGATTGACCCCCACCATCCGCCGAATgcgc < 1:2149077/143‑1 (MQ=255) tGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGCCAGCCCCAGCAGCAGATTGACCCCCACCATCCGCCGAATgcgc > 2:2149077/1‑143 (MQ=255) tGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGCCAGCCCCAGCAGCAGATTGACCCCCACCATCCGCCGAATgcgc > 2:364400/1‑143 (MQ=255) tGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGCCAGCCCCAGCAGCAGATTGACCCCCACCATCCGCCGAATGCGCCCCAGTa > 2:477981/1‑150 (MQ=255) tGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGCCAGCCCCAGCAGCAGATTGACCCCCACCATCCGCCGAATGCGCCCCAGTa < 2:1865635/150‑1 (MQ=255) gCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGCCAGCCCCAGCAGCAGATTGACCCCCACCATCCGCCGAATGCGCCCCAGTAcc > 2:1819175/1‑150 (MQ=255) | TTGGTTTGACCGTTTGCAAATCCTGTTGACGGGAATCTTCCATGTCATGTCCATTCCTCGTCCGCGGGAGGCGCCGCGGGTGAACTGATCTTGCAGCGTCTCTCGCTGCGATCCCTTGCAGGAGCGGGCTTGCCCGCGAACACTGGCAACGCCGGTGCCATCCATCGTGGCTCCTGCTTCACTGCTGTTTGCACGCAACGCCTGTCAGATCACCAGTCGCGAACTGGCCACCGCAACGACGGCCAGCCCCAGCAGCAGATTGACCCCCACCATCCGCCGAATGCGCCCCAGTACC > NC_002947/1285857‑1286151 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |