| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 181,805 | T→C | 8.1% | intergenic (+19/‑87) | PP_r01 → / → PP_5SB | 5S ribosomal RNA/5S ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 181,805 | 0 | T | C | 8.1% | 233.7 / 5.4 | 85 | intergenic (+19/‑87) | PP_r01/PP_5SB | 5S ribosomal RNA/5S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base T (40/37); new base C (5/2); total (46/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.42e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
AGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCA > NC_002947/181662‑181944 | aGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGcac > 1:1866697/1‑150 (MQ=31) aaTTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTACCTGcatgc > 1:1076331/1‑147 (MQ=11) tttCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTACCTGCACATGc > 2:613308/1‑150 (MQ=17) tCTTGACGACCATCGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGCGAAACGATGCATCCCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCACAAAACCCCTATCTGCACATGCAg < 2:1300374/150‑1 (MQ=255) ttGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGCGCG‑TCTCGCGGCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTTGCAAAACTAATATATGCACATGctgtt > 1:147119/1‑146 (MQ=11) gacgacCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTACCTGCACATGCAGGTAg < 1:613308/150‑1 (MQ=17) cgacCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAggg < 2:427023/150‑1 (MQ=32) gacCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGc < 2:2437744/141‑1 (MQ=32) gacCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGc > 1:2437744/1‑141 (MQ=32) ccATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGtt < 1:814785/150‑1 (MQ=32) aTAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGtttt < 2:274747/150‑1 (MQ=32) gagCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAg < 1:1428945/140‑1 (MQ=33) gagCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAg > 2:1428945/1‑140 (MQ=33) ttGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCGTGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTaa < 1:1370934/150‑1 (MQ=17) gAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTa > 1:1121741/1‑150 (MQ=32) gAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTa < 2:1121741/150‑1 (MQ=32) caccTGATCCCATCCCGAACTCAGTGGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATTTTAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGaa < 1:1000558/150‑1 (MQ=255) caccTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGaa < 2:1866697/150‑1 (MQ=35) caccTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGaa < 1:2097004/150‑1 (MQ=35) accTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAg < 1:1796252/146‑1 (MQ=32) accTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAg > 2:1796252/1‑146 (MQ=32) accTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAAc > 1:342647/1‑150 (MQ=35) cTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGTTTTTGTCTTTAAGTAGGAACTa > 1:1457575/1‑150 (MQ=38) tGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTAc > 1:1032361/1‑150 (MQ=38) gATCCCATCCCGAACTCAGTAGTGAAACGATTCATCGCCGA‑CGCAGCGGGTCGATTGGCGAATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACa < 2:1241990/150‑1 (MQ=14) tcccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACaga > 1:2353365/1‑150 (MQ=40) cccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACagag > 2:1978381/1‑150 (MQ=255) catcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGAt > 1:2015888/1‑150 (MQ=255) tcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTc < 2:1794263/150‑1 (MQ=255) cccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTaa < 1:1062241/130‑1 (MQ=33) cccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTaa > 2:1062241/1‑130 (MQ=33) ccGAACTAAAAAATGAAACCATTCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGc < 2:2353365/150‑1 (MQ=14) cGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCa > 1:1977400/1‑150 (MQ=255) agtagtGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTCCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCATAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGt < 1:960242/150‑1 (MQ=255) gtagtGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTc > 2:1590701/1‑150 (MQ=255) gtGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTa < 2:2015888/150‑1 (MQ=255) tGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAg > 2:2057645/1‑150 (MQ=255) gAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAgg > 1:1530034/1‑150 (MQ=255) aaaCGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAggg > 1:307297/1‑150 (MQ=255) aaCGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACa < 2:267053/125‑1 (MQ=40) aaCGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACa > 1:267053/1‑125 (MQ=40) aaCGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATATCGCAAACCCCTTATCTGCACGCGGACGTAGGCGTTTTGTTTTTCGGTAGGCACTACAGAGAAGCGCAGGCACGTCCTAgggg > 2:1579433/1‑149 (MQ=17) aCGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGAc < 1:2057645/150‑1 (MQ=255) tGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTAATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACgg < 2:1156210/148‑1 (MQ=255) tGCATCGCCGAAGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTAATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACgg > 1:1156210/1‑148 (MQ=255) cATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCa > 1:421457/1‑150 (MQ=255) ccGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGTTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGcaca < 2:1457575/150‑1 (MQ=255) gATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGcacaca < 1:750666/150‑1 (MQ=255) tAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTNGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAAtt > 1:275359/1‑150 (MQ=255) gtg‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCtt < 1:1978381/150‑1 (MQ=255) gtg‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCtt < 2:1530034/150‑1 (MQ=255) tg‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGtttt > 2:867798/1‑81 (MQ=35) tg‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGtttt < 1:867798/81‑1 (MQ=35) g‑gggTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTga > 1:2416337/1‑150 (MQ=255) gggTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACAGGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTgac > 2:395850/1‑150 (MQ=255) gTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGAAAGACCCTTATCTGGACATGCAGGTGGGGGTTTTCTCTTTAAGTAGGAAATACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGCATTTCTTgacga > 2:1065251/1‑150 (MQ=25) tttCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTgacgac < 1:393214/150‑1 (MQ=255) ccccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCAt > 1:692522/1‑150 (MQ=255) cccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATa > 1:695547/1‑150 (MQ=255) ccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATag > 2:1445137/1‑150 (MQ=255) cATGTGAGAGTAGGTCATCGTCAAGGTTCATTTGGCAGACCCGCTAGGTGCACGTGCAGGTAGGGGTGTAGTTTTTAGTGGGGAACGACACAGTTTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATaga > 2:615245/1‑150 (MQ=21) aTGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAACCCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATagag < 1:2212117/150‑1 (MQ=255) gagaGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCAtt < 2:342647/150‑1 (MQ=255) gagaGTAAGGCATCGTTAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCAtt > 2:1912068/1‑150 (MQ=255) tAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAac > 1:987336/1‑150 (MQ=255) gTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCt > 1:2450890/1‑124 (MQ=255) gTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCt < 2:2450890/124‑1 (MQ=255) gTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAaccac < 1:1590701/150‑1 (MQ=255) gTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCttt < 1:497759/57‑1 (MQ=38) gTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCttt > 2:497759/1‑57 (MQ=35) tCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGatcc > 1:1825758/1‑150 (MQ=255) aTTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTcc > 2:602206/1‑84 (MQ=255) aTTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTcc < 1:602206/84‑1 (MQ=255) cATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGa < 2:307297/150‑1 (MQ=255) tttCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAAc > 2:104165/1‑150 (MQ=255) acAAAACCCCTACCTGCATGTGCAGATAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTcag > 1:570189/2‑150 (MQ=37) cAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCACGCACGCCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTcagc < 2:1032361/150‑1 (MQ=255) aaaaCCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTcagca > 2:2292662/1‑150 (MQ=255) aaaaCCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTcagca < 1:1912068/150‑1 (MQ=255) aaaaCCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTcagca > 2:2049249/1‑150 (MQ=255) aCCCCTACCTGCGTGTGCAGATAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAaccac > 1:1560707/1‑124 (MQ=38) cccTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTcagca > 1:213308/1‑145 (MQ=255) cccTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTcagca < 2:213308/145‑1 (MQ=255) cccTACCTGCATGTGCAGATAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAacc > 1:931885/1‑120 (MQ=38) cccTACCTGCATGTGCAGATAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAacc < 2:931885/120‑1 (MQ=38) | AGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTG‑GGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCACATGCAGGTAGGGGTTTTGTCTTTAAGTAGGAACTACAGAGATTCGCAGGCACGTCCTAGGGACGGGCCAGCACACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGCA > NC_002947/181662‑181944 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |