Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,425,657 T→C 8.8% intergenic (+52/‑453) PP_1249 → / → PP_1250 DUF4223 domain‑containing protein/group II intron‑encoding maturase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,425,6570TC 8.8% 384.0 / 18.1 133intergenic (+52/‑453)PP_1249/PP_1250DUF4223 domain‑containing protein/group II intron‑encoding maturase
Reads supporting (aligned to +/- strand):  ref base T (66/55);  new base C (6/6);  total (72/61)
Fisher's exact test for biased strand distribution p-value = 7.72e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.64e-01

Only 100 of 133 total aligned reads displayed.

CTGCACCTACGACTACCTGTTCCACCCTTCGGTTTCCATCTCCAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAG  >  NC_002947/1425512‑1425804
                                                                                                                                                 |                                                                                                                                                    
    aCCTACGACTACCTGTTCCACCCTTCGGTTTCCATCTCCAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGACCCAAGGCCCCCGGTCATGcacc                                                                                                                                              >  2:1435305/1‑149 (MQ=255)
           aCTACCTGTTCCACCCTTCGGTTTCCATCTCCAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCgg                                                                                                                                       <  1:351318/150‑1 (MQ=255)
           aCTACCTGTTCCACCCTTCGGTTTCCATCTCCAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCgg                                                                                                                                       <  1:1552772/150‑1 (MQ=255)
             tACCTGTTCCACCCTTCGGTTTCCATCTCCAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCgggg                                                                                                                                     >  2:1040148/1‑150 (MQ=255)
             tACCTGTTCCACCCTTCGGTTTCCATCTCCAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCgggg                                                                                                                                     >  2:1416957/1‑150 (MQ=255)
             tACCTGTTCCACCCTTCGGTTTCCATCTCCAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCgggg                                                                                                                                     <  2:2304108/150‑1 (MQ=255)
             tACCTGTTCCACCCTTCGGTTTCCATCTCCAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCgggg                                                                                                                                     >  1:1413739/1‑150 (MQ=255)
              aCCTGTTCCACCCTTCGGTTTCCATCTCCAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCggggg                                                                                                                                    >  2:1399723/1‑150 (MQ=255)
                   ttCCACCCTTCGGTTTCCATCTCCAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGttttt                                                                                                                               >  1:640202/1‑150 (MQ=255)
                         ccTTCGGTTTCCATCTCCAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTgc                                                                                                                         <  1:1425138/150‑1 (MQ=255)
                         ccTTCGGTTTCCATCTCCAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTgc                                                                                                                         >  1:1833135/1‑150 (MQ=255)
                          cTTCGGTTTCCATCTCCAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGCCATGTGCATGACCgggg                                                                                                                                     >  1:2331629/1‑137 (MQ=255)
                          cTTCGGTTTCCATCTCCAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGCCATGTGCATGACCgggg                                                                                                                                     <  2:2331629/137‑1 (MQ=255)
                                tttCCATCTCCAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGttttt                                                                                                                               >  2:2194069/1‑137 (MQ=255)
                                tttCCATCTCCAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGttttt                                                                                                                               <  1:2194069/137‑1 (MQ=255)
                                   ccATCTCCAAGATCATCGGTGGTTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGCCATGTGCATGACCggg                                                                                                                                      >  1:201744/1‑127 (MQ=255)
                                    cATCTCCAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATgg                                                                                                              >  2:2012527/1‑150 (MQ=255)
                                        tcCAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCCGGCATGGcgcg                                                                                                          >  1:772033/1‑150 (MQ=255)
                                        tcCAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGcgcg                                                                                                          >  2:1687468/1‑150 (MQ=255)
                                          cAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCgggg                                                                                                                                     <  2:52159/121‑1 (MQ=255)
                                          cAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCgggg                                                                                                                                     >  1:52159/1‑121 (MQ=255)
                                          cAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGt                                                                                                                                   <  1:906369/123‑1 (MQ=255)
                                          cAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGt                                                                                                                                   >  2:906369/1‑123 (MQ=255)
                                          cAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGtt                                                                                                        >  2:241758/1‑150 (MQ=255)
                                                  tcGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAt                                                                                                <  1:2012527/150‑1 (MQ=255)
                                                    ggTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGAGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATgc                                                                                              <  1:475998/150‑1 (MQ=255)
                                                      tGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTTATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCATACgcgc                                                                                            >  2:2289726/1‑150 (MQ=255)
                                                       ggCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCa                                                                                           >  1:208099/1‑150 (MQ=255)
                                                         cTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCATACGCGCAAc                                                                                         <  1:2354189/150‑1 (MQ=255)
                                                          tGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAccc                                                                                        >  2:891375/1‑150 (MQ=255)
                                                                 cgatcgatAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTgg                                                                                 >  1:1866574/1‑150 (MQ=255)
                                                                   atcgatAAACTGCCTCAGCAGCCGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGGCGGGGGGTTTTGTGTGCGCCGGGCATGGCGCGTTGCGCGGATGCGCAACCCGCGTGGtt                                                                               >  2:308089/1‑150 (MQ=38)
                                                                      gatAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTtgtg                                                                            <  2:208099/150‑1 (MQ=255)
                                                                      gatAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTtgtg                                                                            >  1:1392623/1‑150 (MQ=255)
                                                                       atAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCgggg                                                                                                                                     >  2:63996/1‑92 (MQ=255)
                                                                       atAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTgtgg                                                                           >  1:356507/1‑150 (MQ=255)
                                                                       atAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTgtgg                                                                           >  1:1700886/1‑150 (MQ=255)
                                                                       atAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAATCCCCCGGTCATGCACATGGCCgggg                                                                                                                                     <  1:63996/92‑1 (MQ=255)
                                                                         aaaCTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTgtggtg                                                                         <  1:2285057/150‑1 (MQ=255)
                                                                         aaaCTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTgtggtg                                                                         <  2:1055322/150‑1 (MQ=255)
                                                                          aaCTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGtggtgg                                                                        >  2:1779805/1‑150 (MQ=255)
                                                                             tGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCa                                                                    >  2:2003536/1‑150 (MQ=255)
                                                                              gCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCaa                                                                   <  2:356507/150‑1 (MQ=255)
                                                                                 tCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCATACGCGCAAcgc                                                                                       >  2:2079188/1‑126 (MQ=255)
                                                                                 tCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCATACGCGCAAcgc                                                                                       <  1:2079188/128‑3 (MQ=255)
                                                                                 tCAGCAAAAGTAATCTTGGCGGTACACTGATCGCGACGCTTGCGGCGTGAAACAAGGCCCCCGGTCATGCACATGACCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTg                                                                >  2:1048264/1‑150 (MQ=25)
                                                                                  cagcagcagTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTgg                                                               <  2:1866574/150‑1 (MQ=255)
                                                                                      agcagTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGa                                                           <  2:1394100/150‑1 (MQ=255)
                                                                                        cagTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGATTGGTTGTGGTGGCCAAGTGGGTGACt                                                         >  2:2372920/1‑150 (MQ=255)
                                                                                          gTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTg                                                       >  1:2340695/1‑150 (MQ=255)
                                                                                           tAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGt                                                                 >  1:964250/1‑139 (MQ=255)
                                                                                           tAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGt                                                                 <  2:964250/139‑1 (MQ=255)
                                                                                           tAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTgg                                                      >  1:799156/1‑150 (MQ=255)
                                                                                             aTCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTtgtgt                                                                                                                           >  1:152652/1‑80 (MQ=255)
                                                                                             aTCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTCCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAg                                                    <  2:1328264/150‑1 (MQ=255)
                                                                                                ttGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCAGATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTAACTTGGAGGTg                                                 >  2:1258220/1‑150 (MQ=255)
                                                                                                ttGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTACGCGTCTGCGAAAGTTACTTGTTTTGGTTTCCTAAGTGTGTGACTTGGAgctc                                                 >  2:624520/1‑147 (MQ=25)
                                                                                                        aCCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCct                                         <  1:1043882/150‑1 (MQ=255)
                                                                                                         cccTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGc                                                                       <  2:1054311/120‑1 (MQ=255)
                                                                                                         cccTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGc                                                                       >  1:1054311/1‑120 (MQ=255)
                                                                                                         cccTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCctc                                        <  1:1278093/150‑1 (MQ=255)
                                                                                                          ccTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCggg                                                                                                                                      <  2:211558/56‑1 (MQ=255)
                                                                                                          ccTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCggg                                                                                                                                      >  1:211558/1‑56 (MQ=255)
                                                                                                          ccTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCctct                                       >  1:468330/1‑150 (MQ=255)
                                                                                                          ccTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCctct                                       >  1:1674285/1‑150 (MQ=255)
                                                                                                          ccTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTGGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCctct                                       >  1:1203041/1‑150 (MQ=255)
                                                                                                                cgcgACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTacacac                                 <  2:1833135/150‑1 (MQ=255)
                                                                                                                  cgACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCTCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACAccc                               >  2:741714/1‑150 (MQ=255)
                                                                                                                   gACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAt                                                                                                >  1:189924/1‑85 (MQ=255)
                                                                                                                   gACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAt                                                                                                <  2:189924/85‑1 (MQ=255)
                                                                                                                   gACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTAt                                                                                                <  2:190925/85‑1 (MQ=255)
                                                                                                                      gCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTa                                                                                                 <  1:1349644/81‑1 (MQ=255)
                                                                                                                        ttGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAg                         >  1:658759/1‑150 (MQ=255)
                                                                                                                         tGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGATTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAgg                        <  1:2372920/150‑1 (MQ=255)
                                                                                                                            ggcgTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAgggg                      <  1:1254189/149‑1 (MQ=255)
                                                                                                                            ggcgTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGa                     <  2:2155614/150‑1 (MQ=255)
                                                                                                                             gcgTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGaa                    <  1:2003536/150‑1 (MQ=255)
                                                                                                                             gcgTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGaa                    <  2:544293/150‑1 (MQ=255)
                                                                                                                              cgTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGTCAGGCATGGCGCGTTGCGCGTATGCGCACCCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAg                   <  1:417628/150‑1 (MQ=255)
                                                                                                                              cgTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTacacac                                 <  2:1477334/136‑1 (MQ=255)
                                                                                                                                  aTCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGtt               >  2:780052/1‑150 (MQ=255)
                                                                                                                                   tCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTa              >  1:1063828/1‑150 (MQ=255)
                                                                                                                                    ccAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAg             >  1:1789538/1‑150 (MQ=255)
                                                                                                                                     cAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGc            <  2:640202/150‑1 (MQ=255)
                                                                                                                                     cAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGc            >  1:800111/1‑150 (MQ=255)
                                                                                                                                       aGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTgc                                                                                                      <  2:2271812/59‑1 (MQ=255)
                                                                                                                                       aGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTgc                                                                                                      >  1:2271812/1‑59 (MQ=255)
                                                                                                                                       aGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCg          <  2:772033/150‑1 (MQ=255)
                                                                                                                                          cccccGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAg       <  1:1080709/150‑1 (MQ=255)
                                                                                                                                          cccccGGCCATGTGCATGACCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGt                                                             <  2:2296103/96‑1 (MQ=14)
                                                                                                                                          cccccGGCCATGTGCATGACCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGt                                                             >  1:2296103/1‑96 (MQ=14)
                                                                                                                                           ccccGGCCATGTGCATGACCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTtgtg                                                                            <  1:1907343/81‑1 (MQ=14)
                                                                                                                                           ccccGGCCATGTGCATGACCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTtgtg                                                                            >  2:2063086/1‑81 (MQ=14)
                                                                                                                                           ccccGGCCATGTGCATGACCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAgg      >  1:1435225/1‑150 (MQ=11)
                                                                                                                                            cccGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGa                                                     <  1:1339134/102‑1 (MQ=255)
                                                                                                                                            cccGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGa                                                     >  2:1339134/1‑102 (MQ=255)
                                                                                                                                            cccGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGc     >  1:2400270/1‑150 (MQ=255)
                                                                                                                                            cccGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGc     >  2:1579942/1‑150 (MQ=255)
                                                                                                                                              cGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCaa   >  2:2258340/1‑150 (MQ=255)
                                                                                                                                               ggTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAg  <  2:1392623/150‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
CTGCACCTACGACTACCTGTTCCACCCTTCGGTTTCCATCTCCAAGATCATCGGTGGCTGCGGCCCGATCGATAAACTGCCTCAGCAGCAGTAATCTTGGCGGTACCCTGATCGCGACGCTTGCGGCGTGATCCAAGGCCCCCGGTCATGCACATGGCCGGGGGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAG  >  NC_002947/1425512‑1425804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: