| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,551,324 | G→T | 9.2% | intergenic (+41/+85) | groL → / ← pykA | chaperonin GroEL/pyruvate kinase II |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,551,324 | 0 | G | T | 9.2% | 392.6 / 16.7 | 126 | intergenic (+41/+85) | groL/pykA | chaperonin GroEL/pyruvate kinase II |
| Reads supporting (aligned to +/- strand): ref base G (58/56); new base T (7/5); total (65/61) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.64e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 130 total aligned reads displayed.
TCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTG > NC_002947/1551178‑1551471 | tCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCga < 1:937169/150‑1 (MQ=255) gatgatCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGaa > 2:1933735/1‑150 (MQ=255) atCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCTCGCGAACCgg < 1:1665214/150‑1 (MQ=255) tCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCggg < 2:1940320/150‑1 (MQ=255) tCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCggg < 2:839151/150‑1 (MQ=255) tCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTCGCATGGGCGGCATGATGTAA‑TAAGCCTTTAGTCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCggg < 1:1004449/150‑1 (MQ=255) ccaccGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCTCGCGAACCggg > 2:471371/1‑147 (MQ=255) ccaccGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCt < 1:1366207/150‑1 (MQ=255) caccGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCTGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCtt > 2:1297479/1‑150 (MQ=255) caccGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCtt > 1:1854112/1‑150 (MQ=255) caccGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCtt > 1:1644137/1‑150 (MQ=255) aaGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTa < 2:2087314/150‑1 (MQ=255) aaGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTa < 2:948615/150‑1 (MQ=255) ccATGGTTGCCGACCTGCCGGAAGACAAGACAGATGATGGCAAGCCTGATATTGGTGGCATGGGTGGCACGCGCTTTATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTg < 1:1739841/150‑1 (MQ=255) cATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGc > 2:73180/1‑150 (MQ=255) aTGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCt > 2:1801348/1‑150 (MQ=255) tGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCgg < 1:1482413/150‑1 (MQ=255) gACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTa < 2:670192/136‑1 (MQ=255) cTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCctct < 1:73180/150‑1 (MQ=255) cGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCgc < 1:495369/150‑1 (MQ=255) aGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATAGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCgcagca > 2:2030749/1‑150 (MQ=255) gACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGcac > 2:88544/1‑150 (MQ=255) cacgCCCGCTGCTCGCACGCCTGATATGGGTGGCATGGGGGGCATGGGCGGCCTGATGTCGGAGCTCC‑TTGCCCCCTTGCTCTATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACaa < 1:768177/147‑1 (MQ=255) ccAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCt > 1:2280714/1‑150 (MQ=255) ccAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCt > 2:2112787/1‑150 (MQ=255) aGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTcgc > 1:2383540/1‑97 (MQ=255) aGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTcgc < 2:2383540/97‑1 (MQ=255) gctgctGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTgcg > 1:1570596/1‑150 (MQ=255) tgctgGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATCGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCt > 1:1690192/1‑150 (MQ=255) gctgGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATCGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCtt < 2:1690192/150‑1 (MQ=255) tgGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTACGGCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGa < 1:1729752/150‑1 (MQ=255) tgGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGa < 1:1255974/150‑1 (MQ=255) gCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGc > 2:2453236/1‑150 (MQ=255) gCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGc < 2:254641/150‑1 (MQ=255) aTGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTa < 1:4619/106‑1 (MQ=255) aTGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTa > 2:4619/1‑106 (MQ=255) ccTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTtgt > 2:1670210/1‑150 (MQ=255) cTGTTATCGGTGGCATCAGTCACATAGGCGTCAGCATGTAAGCCAGGC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGTGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTtgtg < 2:514444/150‑1 (MQ=255) tGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTg > 2:97178/1‑104 (MQ=255) atatGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTAAGCCTTGTGCtg > 2:946448/1‑150 (MQ=255) gtggcatgggtggcatggGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAAc < 2:395288/150‑1 (MQ=255) gtggcatgggtggcatggGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAAc < 2:835855/150‑1 (MQ=255) ggcatgggtggcatgggCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCtgt > 2:1123146/1‑143 (MQ=255) ggcatgggtggcatgggCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCtgt < 1:1123146/143‑1 (MQ=255) ggcatgggtggcatgggCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGa < 1:1929229/150‑1 (MQ=255) catgggtggcatgggCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATAAAAAAGCCCCGGTTCTCGCGAACCGGGGCTTTTTGAtg < 1:1061550/91‑2 (MQ=25) catgggtggcatgggCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATAAAAAAGCCCCGGTTCTCGCGAACCGGGGCTTTTTGAtg > 2:1061550/1‑90 (MQ=25) tgggtggcatgggCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTgg > 1:658201/1‑150 (MQ=255) gggtggcatgggCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGcc > 2:1150401/1‑129 (MQ=255) gggtggcatgggCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGcc < 1:1150401/129‑1 (MQ=255) gtggcatgggCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCtt > 1:1837791/1‑129 (MQ=255) gtggcatgggCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCtt < 2:1837791/129‑1 (MQ=255) ggcatgggCCGCATGATGCAAGCCAGCC‑TTACCCCCCTGCACCCTCAGAACGCCCCGGTTCGCGGGAACCGGGGCTTTATTATTTCAGACGGGGCCTCGTCGCAGCACCAGGCTGCGCTTGAGCCTCCCGCTGCCAAACGAGCggcacac > 2:312471/1‑145 (MQ=255) gcatgggCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAAc < 2:1570596/150‑1 (MQ=255) tgggCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCTCGCGAAc > 2:1632978/1‑65 (MQ=38) tgggCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCTCGCGAAc < 1:1632978/65‑1 (MQ=38) gcATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCg < 2:1289469/150‑1 (MQ=255) cATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCgg > 2:430195/1‑150 (MQ=255) gatgTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGa < 2:300534/108‑1 (MQ=255) gatgTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGa > 1:300534/1‑108 (MQ=255) atgTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCa > 1:1649200/1‑150 (MQ=255) tgTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCAc > 1:88600/1‑150 (MQ=255) tAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCg > 2:1705090/1‑150 (MQ=255) gccagcc‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCg > 1:1537575/1‑81 (MQ=255) gccagcc‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCg < 2:1537575/81‑1 (MQ=255) gccagcc‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGa > 1:1921760/1‑101 (MQ=255) gccagcc‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGa < 2:1921760/101‑1 (MQ=255) gccagcc‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAAc > 1:1703701/1‑130 (MQ=255) gccagcc‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAAc < 2:1703701/130‑1 (MQ=255) ccagcc‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCt < 2:1711348/92‑1 (MQ=255) c‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAgg > 2:2286054/1‑150 (MQ=255) ttACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGa > 2:1199317/1‑150 (MQ=255) cccccTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGc > 2:1777311/1‑63 (MQ=255) cccTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCgcagc < 1:1776673/72‑1 (MQ=255) cccTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCgcagc > 2:1776673/1‑72 (MQ=255) cccTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTtgt > 1:2200919/1‑95 (MQ=255) cccTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCa > 2:1911135/1‑150 (MQ=255) cacTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCa > 2:1911095/3‑150 (MQ=255) ccTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCAt < 1:452898/150‑1 (MQ=255) aTCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTgg > 1:304288/1‑150 (MQ=255) taaaaaaGCCCCGGTTCTCGCGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGt > 2:639798/3‑150 (MQ=255) tCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTTTTAGTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGt < 1:1205604/150‑1 (MQ=255) tCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGt < 1:262165/150‑1 (MQ=255) tCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGt < 2:2280714/150‑1 (MQ=255) tCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGt < 1:1199317/150‑1 (MQ=255) aaGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCAc > 2:760575/1‑150 (MQ=255) gCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCtgt > 2:166161/1‑83 (MQ=255) gCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCg > 2:461758/1‑150 (MQ=255) ccccGGTTCTCGCGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGa > 2:1618896/1‑150 (MQ=255) ccccGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGAc < 2:628829/103‑1 (MQ=255) ccccGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGAc > 1:628829/1‑103 (MQ=255) cccGGTTCTCGCGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGAt > 1:278410/1‑150 (MQ=255) cccGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGAt > 1:2054128/1‑150 (MQ=255) ccGGTTCTCGCGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATg > 2:2247193/1‑150 (MQ=255) ccGGTTCGCGAGAACCGGGGCTTTTTTATTGCTTTTGTGTCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGCTCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATg > 2:2093527/1‑150 (MQ=255) ggTTCGCGAGACCACGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCCAGCGCCTGCTCTGGGTCTTGGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGgt < 1:2112787/150‑1 (MQ=255) ttCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGgtat < 1:461758/150‑3 (MQ=255) tCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGtgtg < 2:704706/150‑1 (MQ=255) gcgAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGt < 1:2109064/133‑1 (MQ=255) gcgAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGt > 2:2109064/1‑133 (MQ=255) | TCTGATGATCACCACCGAAGCCATGGTTGCCGACCTGCCGGAAGACAAGCCAGCTGCTGGCATGCCTGATATGGGTGGCATGGGTGGCATGGGCGGCATGATGTAAGCCAGCC‑TTACCCCCCTGCACCATCAAAAAGCCCCGGTTCGCGAGAACCGGGGCTTTTTTATTGCTGTCGGGGCCTCTTCGCAGCACAAGGCTGCGCTTGAGCCTTGTGCTGTGAAACGAGTGGATCAACCGACCAGCGGATCACCGACGTGCAGGATCTTCATGCCATTGGTGCCACCGATGGTGTG > NC_002947/1551178‑1551471 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |