| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,642,334 | T→C | 5.2% | intergenic (‑120/+32) | PP_1442 ← / ← lon‑I | hypothetical protein/DNA‑binding ATP‑dependent protease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,642,334 | 0 | T | C | 5.2% | 408.6 / 7.6 | 134 | intergenic (‑120/+32) | PP_1442/lon‑I | hypothetical protein/DNA‑binding ATP‑dependent protease |
| Reads supporting (aligned to +/- strand): ref base T (64/63); new base C (4/3); total (68/66) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.24e-01 | |||||||||||
Only 100 of 135 total aligned reads displayed.
CAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCA > NC_002947/1642185‑1642481 | cAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGt < 1:655412/150‑1 (MQ=255) gggAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCg < 2:533256/150‑1 (MQ=255) ggAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCgg < 2:1233996/150‑1 (MQ=255) aaCGAGCAGACGAGGAGAGGTCGTGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGc < 2:1198033/150‑1 (MQ=255) gCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CACCTGCACGGGTA‑CGCTACCCCTGCAGGCGCGGGCttact < 2:2132613/150‑4 (MQ=37) gACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCcgc > 2:1771799/1‑150 (MQ=255) gaggagAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGaa < 1:628349/150‑1 (MQ=255) gaggagAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGaa < 1:1771799/150‑1 (MQ=255) aggagAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAag > 2:2315112/1‑150 (MQ=255) gagGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAggg < 1:201583/150‑1 (MQ=255) agGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGc > 1:1449027/1‑150 (MQ=255) gTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCgg > 2:941910/1‑150 (MQ=255) gTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCCGGCTTGCCCGCGAAGAGGGCgg < 1:742145/150‑1 (MQ=255) tCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACTCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGGAGGTGCGGGCTTGCCCGCGAAGAGGGCGGt < 2:1406949/150‑1 (MQ=255) tCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGt < 1:2106202/150‑1 (MQ=255) ggtggCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGcgt < 1:2301628/150‑3 (MQ=255) ggtggCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCCCGAAGCCAGCGCTGCAg < 2:1602585/150‑1 (MQ=255) gtggCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAgg > 1:477740/1‑150 (MQ=255) gtggCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAgg < 2:1449027/150‑1 (MQ=255) gtggCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAgg > 1:2358548/1‑150 (MQ=255) gCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTa < 1:1711910/150‑1 (MQ=255) tCCGAAGGCTGGCGATGGCCTGAGGATACGAGCTGACCCTTGAAAGTTGTGCTGCCTGTGACGGTCCTTTAGC‑A‑CACGTCTGAACTCCAGTCACGATAGCG‑GACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGCCGGGGCAGGCTAGa > 1:1126167/1‑150 (MQ=255) tCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGACGAGGGCGGTGCAGGCTAGa > 1:119845/1‑150 (MQ=255) tCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGa > 1:166137/1‑150 (MQ=255) ccGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGaa < 1:1889325/150‑1 (MQ=255) ccGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTATGCGCGAAGAGGGCGGTGCAGGCTAGaa < 1:1243203/150‑1 (MQ=255) gAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAGATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CACCTGCACGGGTA‑CGCTACCCCTGCAGGCGCgg > 2:839109/1‑115 (MQ=25) gAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAGATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CACCTGCACGGGTA‑CGCTACCCCTGCAGGCGCgg < 1:839109/115‑1 (MQ=25) gAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACa < 2:1461064/150‑1 (MQ=255) tGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACtt > 2:49837/1‑150 (MQ=255) tGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACtt > 2:1413578/1‑150 (MQ=255) gATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGc > 2:504292/1‑150 (MQ=255) ccgcgcaTACCCGATGACAGAGGCCCTCTGTGCACCTTGTGCCGGTCCTCTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCAGGGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGTCTAGAACAGCACTTTCGCCACGTc > 2:1207428/7‑150 (MQ=255) cTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGAAAAC‑GCGCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTc > 1:1970932/1‑150 (MQ=255) aCCCGATGACAGAGGAAAATTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAgc > 2:1919849/1‑150 (MQ=255) ccGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAgcgc > 2:1675230/1‑150 (MQ=255) ccGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAgcgc > 1:939122/1‑150 (MQ=255) ccGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAgcgc > 1:1064267/1‑150 (MQ=255) ccGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAgcgc > 1:454340/1‑150 (MQ=255) ccGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAgcgc > 1:2327994/1‑150 (MQ=255) cGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGc < 1:2287160/116‑1 (MQ=255) cGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGc > 2:2287160/1‑116 (MQ=255) gatgatCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCtt > 2:48620/1‑150 (MQ=255) gatCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGc < 2:454340/150‑1 (MQ=255) tCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAACGCTTGGCgc > 1:2202984/1‑149 (MQ=255) cGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGaa < 2:2327994/150‑1 (MQ=255) gAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGaaa < 2:1126167/150‑1 (MQ=255) aGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTa > 1:2160253/1‑109 (MQ=255) gAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGc > 2:2419546/1‑150 (MQ=255) gAAATTTGTGCTGCCTGTGCCGATCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGGGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGc > 2:868802/1‑150 (MQ=255) aaTTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCAc < 1:2419546/150‑1 (MQ=255) tgcCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGcc > 1:2419057/1‑150 (MQ=255) tgcCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGcc > 2:483334/1‑150 (MQ=255) ccTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAAAAGCACTTTCGCCACGTCGGCGAAGCGCTTGGCGAAATGCACTGTCAGGCCtt > 2:1245657/1‑150 (MQ=255) cTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTc < 2:2202521/106‑1 (MQ=255) cTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTc > 1:2202521/1‑106 (MQ=255) cTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑AGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGCCAGGCCTTc > 1:312809/1‑150 (MQ=255) ccGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACa > 2:1387966/1‑93 (MQ=255) ccGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACa < 1:1387966/93‑1 (MQ=255) ccGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCa < 2:939122/150‑1 (MQ=255) ggTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAg > 2:1990987/1‑149 (MQ=255) tCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACa > 1:769600/1‑89 (MQ=255) tCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACa < 2:769600/89‑1 (MQ=255) tttCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAg > 2:835831/1‑87 (MQ=255) tttCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGAGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTc > 2:750626/1‑150 (MQ=255) tCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCa > 1:611999/1‑74 (MQ=255) tCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCa < 2:611999/74‑1 (MQ=255) cgcgAATAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCGGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCgg < 2:1751992/150‑1 (MQ=255) gcgAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGc > 2:1660039/1‑150 (MQ=255) cgAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCCAGTTTAACTAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCa > 2:1243729/1‑150 (MQ=255) cgAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCa < 1:611895/150‑1 (MQ=255) gCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCAc > 1:784725/1‑114 (MQ=255) cccG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCa > 1:2009850/1‑112 (MQ=255) cccG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCa < 2:2009850/112‑1 (MQ=255) cccG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCg > 1:936061/1‑150 (MQ=255) cg‑‑cgCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGaa < 1:49837/150‑1 (MQ=255) cg‑‑cgCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGaa < 1:967548/150‑1 (MQ=255) cg‑‑caCCTGCACGGGTA‑CGCTACCCCTGCAGGCGCGGGCTTACTCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGaa > 1:454951/1‑150 (MQ=25) g‑‑cgcCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGaa < 1:2001520/149‑1 (MQ=255) gcCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTc > 2:1847804/1‑150 (MQ=255) cAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGtt > 2:488916/1‑135 (MQ=255) cAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGtt < 1:488916/135‑1 (MQ=255) ggTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCa < 1:1440376/62‑1 (MQ=255) ggTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCa > 2:1440376/1‑62 (MQ=255) gTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTg < 1:48620/150‑1 (MQ=255) gTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAATCCTACAGTTCTTCGAAGTCGCCGCGGTTg < 1:663425/150‑1 (MQ=255) gTAGCG‑TACAAGTGCAGGTGAGGGATTGCCCGCGAAGAGGGCTGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTg < 2:2358548/150‑1 (MQ=255) tAGCG‑TACCAGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTACGGCAGTTCTTCGAAGTCGCCGCGGTTgg > 2:1089838/1‑150 (MQ=255) aGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGAGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGCTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTggg < 2:1277319/150‑1 (MQ=255) g‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGTTCTTCTTCGAAGTCGCCGCGGTTGGGCTc < 1:1243729/150‑1 (MQ=255) g‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGATAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAg < 2:1526036/111‑1 (MQ=255) g‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGATAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAg > 1:1526036/1‑111 (MQ=255) ccGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGAACATCGAAGTCGCCGCGGTTGGGCTCCGGc > 2:2134388/1‑150 (MQ=255) cGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGCAGTCGCCGCGGTTTGGCTCCGGCa < 2:1970932/150‑1 (MQ=255) cGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCa < 1:1675230/150‑1 (MQ=255) gTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAg > 2:1872847/1‑150 (MQ=255) gTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAg > 2:1310499/1‑150 (MQ=255) gTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAg > 2:101354/1‑150 (MQ=255) ggTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCa < 2:477740/150‑1 (MQ=255) ggTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCa < 2:1677494/150‑1 (MQ=255) | CAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGCCGGTCCTTTCGCGAGTAAGCCCG‑‑CGCCTGCAGGGGTAGCG‑TACCCGTGCAGGTGCGGGCTTGCCCGCGAAGAGGGCGGTGCAGGCTAGAACAGCACTTTCGCCACGTCGGCAAAGCGCTTGGCGAAATGCACTGTCAGGCCTTCGCGCAGGTAGTCCGGCAGTTCTTCGAAGTCGCCGCGGTTGGGCTCCGGCAGGATCA > NC_002947/1642185‑1642481 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |