Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,704,679 T→A 10.0% M1* (TTG→TAG) †‡ PP_1499 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,704,6790TA10.0% 329.9 / 21.3 116M1* (TTG→TAG) †‡PP_1499hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (55/49);  new base A (5/7);  total (60/56)
Fisher's exact test for biased strand distribution p-value = 5.49e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.75e-01

Only 100 of 116 total aligned reads displayed.

CGGAGGACAACGGCGACGGCGTGCTGATCGACAGCCCGGCGGCGCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATCCGGGTCCTTGACGCGGTGAAGTGGGACGACA  >  NC_002947/1704531‑1704825
                                                                                                                                                     |                                                                                                                                                  
cGGAGGACAACGGCGACGGCGTGCTGATCGACAGCCCGGCGGCGCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTg                                                                                                                                                   <  1:1966220/150‑1 (MQ=255)
 ggaggaCAACGGCGACGGCGTGCTGATCGACAGCCCGGCGGCGCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGc                                                                                                                                                  >  1:2092801/1‑150 (MQ=255)
 ggaggaCAACGGCGACGGCGTGCTGATCGACAGCCCGGCGGCGCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGc                                                                                                                                                  >  1:2407204/1‑150 (MQ=255)
      aCAACGGCGACGGCGTGCTGATCGACAGCCCGGCGGCGCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCcgcg                                                                                                                                             >  1:880828/1‑150 (MQ=255)
        aaCGGCGACGGCGTGCTGATCGACAGCCCGGCGGCGCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCTTGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGAGaa                                                                                                                                           <  1:1636799/150‑1 (MQ=255)
        aaCGGCGACGGCGTGCTGATCGACAGCCCGGCGGCGCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCAAGCCCGCGaa                                                                                                                                           <  1:908169/150‑1 (MQ=255)
          cggcgacggcgTGCTGATCGACAGCCCGGCGGCGCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAaga                                                                                                                                         <  1:336791/150‑1 (MQ=255)
           ggcgacggcgTGCTGATCGAACGCCCGGCGGCGCGGGTGCTGGCCTACCGGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCAAGCCCGCGAagac                                                                                                                                        <  2:2359103/150‑2 (MQ=255)
               acggcgTGCTGATCGACAGCCCGGCGGCGCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCg                                                                                                                                    <  1:952417/150‑1 (MQ=255)
               acggcgTGCTGATCGACAGCCCGGCGGCGCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCCTCTTCGCGGGCAAGCCCGCGAAGACGcca                                                                                                                                    <  2:2023827/150‑2 (MQ=255)
                  gcgTGCTGATCGACAGCCCGGCGGCGCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCACGGGCTTGCCCGCGAAGAGGCAGGTa                                                                                                                                 >  1:2335826/1‑150 (MQ=255)
                     tGCTGATCGACAGCCCGGCGGCGCGGGTGCTGGCCTACCTGGACGACCCGCCCACCTCCGACCTC‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAg                                                                                                                              <  2:1254441/150‑1 (MQ=255)
                         gATCGACAGCCCGGCGGCGCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGttt                                                                                                                          >  2:2224440/1‑150 (MQ=255)
                          aTCGACAGCCCGGCGGCGCGGGTGCTGGCCTACCTGGACGACCAGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTc                                                                                                                         <  2:1777306/150‑1 (MQ=255)
                             gACAGCCCGGCGGCGCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCgtg                                                                                                                      >  2:761390/1‑150 (MQ=255)
                              aCAGCCCGGCGGCGCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCgtgt                                                                                                                     >  2:1699129/1‑150 (MQ=255)
                              aCAGCCCGGCGGCGCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCgtgt                                                                                                                     >  2:1948868/1‑150 (MQ=255)
                              aCAGCCCGGCGGCGCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCgtg                                                                                                                      <  1:698629/149‑1 (MQ=255)
                              aCAGCCCGGCGGCGCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCgtg                                                                                                                      >  2:698629/1‑149 (MQ=255)
                                   ccGGCGGCGCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAg                                                                                                                >  1:996676/1‑150 (MQ=255)
                                    cggcggCGCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAaga                                                                                                                                         <  1:172858/124‑1 (MQ=255)
                                    cggcggCGCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAaga                                                                                                                                         >  2:172858/1‑124 (MQ=255)
                                      gcggcgCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGaaa                                                                                                             <  1:194206/150‑1 (MQ=255)
                                       cggttctggTGCTGGCCTACCTGGACGACCCGGCCAACTCCG‑CATGTTTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAg                                                                                                            <  1:854803/143‑1 (MQ=255)
                                       cggcgCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAg                                                                                                            <  1:306386/150‑1 (MQ=255)
                                       cggcgCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCCCGTGTCCCAGTCCTGGTGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAg                                                                                                            <  2:2039930/150‑1 (MQ=255)
                                         gcgcGGGTGCTGGCCTACCTGGACGACCCGGACCGTTCGGATCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGa                                                                                                          <  2:563907/150‑1 (MQ=255)
                                            cgGGTGCTGGCCTACCTGGACGCCCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTGCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGtt                                                                                                       <  1:1024217/150‑1 (MQ=255)
                                                   tGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTg                                                                                                >  1:1854327/1‑150 (MQ=255)
                                                    ggCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTgg                                                                                               >  1:2250062/1‑150 (MQ=255)
                                                      cccaCCTGGCCGCCACGCCCAACGCCGGCCTG‑GTCGGCGAAGTGGCGCGGTGCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGAc                                                                                             <  2:261253/147‑1 (MQ=255)
                                                      ccTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGAc                                                                                             <  2:940839/150‑1 (MQ=255)
                                                          ccTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAAt                                                                                         >  1:632425/1‑150 (MQ=255)
                                                             ggACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATAcc                                                                                      >  1:1945730/1‑150 (MQ=255)
                                                               acgacCCGGCCAACTAAGACCTG‑TTCATCAAAATGGCGCGGTTCCAACGCTCGGGCAAAGGACCGTGTTGGGGTCTTCGCGGGCGTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAg                                                                                    >  2:2104724/1‑150 (MQ=255)
                                                                 gacCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCa                                                                                  <  2:1945730/150‑1 (MQ=255)
                                                                  acCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACTAATACCAGCaa                                                                                 <  1:1813719/150‑1 (MQ=255)
                                                                   cccGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCTAATACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCATCaaa                                                                                <  1:1356602/150‑1 (MQ=255)
                                                                    ccGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAAc                                                                               >  2:375269/1‑150 (MQ=255)
                                                                    ccGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAAc                                                                               >  1:1190557/1‑150 (MQ=255)
                                                                     cGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAAcc                                                                              >  2:48609/1‑150 (MQ=255)
                                                                     cGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCACGTCAAAGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAAcc                                                                              >  1:1730569/1‑150 (MQ=255)
                                                                      ggCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTa                                                                                                                                 <  2:445000/98‑1 (MQ=255)
                                                                      ggCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTa                                                                                                                                 >  1:445000/1‑98 (MQ=255)
                                                                      ggCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCaaa                                                                                <  2:1401575/147‑1 (MQ=255)
                                                                      ggCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCaaa                                                                                >  1:1401575/1‑147 (MQ=255)
                                                                       gCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCAt                                                                            <  1:1318301/150‑1 (MQ=255)
                                                                           aCTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGGAGTCTAACCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCcgc                                                                        <  1:1615293/150‑1 (MQ=255)
                                                                            cTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCcgcg                                                                       <  1:761390/150‑1 (MQ=255)
                                                                            cTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCAAGCCCGCGAagac                                                                                                                                        <  1:1140225/85‑2 (MQ=39)
                                                                             tCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCgcgc                                                                      >  2:644941/1‑150 (MQ=255)
                                                                             tCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCgcgc                                                                      <  1:466367/150‑1 (MQ=255)
                                                                               cGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTa                                                                                                                    <  1:2217088/102‑1 (MQ=255)
                                                                               cGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTa                                                                                                                    >  2:2217088/1‑102 (MQ=255)
                                                                                   cTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATAc                                                                                       <  2:1800773/127‑1 (MQ=255)
                                                                                   cTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTc                                                                >  1:1341742/1‑150 (MQ=255)
                                                                                     g‑TTCGGCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCg                                                              >  2:1214350/1‑150 (MQ=255)
                                                                                       ttCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGa                                                             >  2:1129443/1‑150 (MQ=255)
                                                                                          gtcgAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACGGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCg                                                          >  2:1439426/1‑150 (MQ=255)
                                                                                            cgAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAATAATCTGCGCCCTGTCCGACCGCa                                                        <  2:2040251/150‑1 (MQ=255)
                                                                                                   gcgcGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTa                                                                                                                 >  1:2081789/1‑86 (MQ=255)
                                                                                                   gcgcGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTa                                                                                                                 <  2:2081789/86‑1 (MQ=255)
                                                                                                   gcgcGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGGATAc                                                                                       >  1:1548217/1‑112 (MQ=255)
                                                                                                   gcgcGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATAc                                                                                       <  2:1548217/112‑1 (MQ=255)
                                                                                                     gcgGTTCCAGCGCTCGGGCAAATGACTGTGTGGACGTGTTCAGGTGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCgg                                               >  1:1233919/1‑150 (MQ=255)
                                                                                                     gcgGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGaaa                                                                                                             >  1:2103373/1‑88 (MQ=255)
                                                                                                     gcgGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGaaa                                                                                                             <  2:2103373/88‑1 (MQ=255)
                                                                                                     gcgGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCgg                                               >  2:2280736/1‑150 (MQ=255)
                                                                                                     gcgGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCgg                                               >  1:530079/1‑150 (MQ=255)
                                                                                                            cAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGAc                                        <  1:48609/150‑1 (MQ=255)
                                                                                                              gcgcTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGc                                      >  1:2025393/1‑150 (MQ=255)
                                                                                                              gcgcTCGGGCAAATGACCGTGCTGACGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGGTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGc                                      <  2:1211821/150‑1 (MQ=255)
                                                                                                                 cTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGa                                   >  1:1905197/1‑150 (MQ=255)
                                                                                                                    gggCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAACGGGGCTGCCGGTGGACGAATACCAGCAAGCAAGCCACGCCCTTTCCGACCGCATCGTCGCGGCACAGACGCCGATcc                                >  1:1115751/1‑150 (MQ=255)
                                                                                                                    gggCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATcc                                >  2:2321851/1‑150 (MQ=255)
                                                                                                                      gCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATCCgg                              <  2:1854327/150‑1 (MQ=255)
                                                                                                                          aTGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATAc                                                                                       <  2:27568/89‑1 (MQ=255)
                                                                                                                            gACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATCCGGGTCCtt                        <  1:1129443/150‑1 (MQ=255)
                                                                                                                            gACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATCCGGGTCCtt                        <  1:375269/150‑1 (MQ=255)
                                                                                                                              ccGTGTTGGCGTCTTCGCGGGCTAGCCCGAGAATAGGCCGGTACAGGTTTCGTGTACTGGCAGGTGTTTCCCTTCTGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATCCGGGTCCTTGa                      <  1:644941/150‑1 (MQ=255)
                                                                                                                                 tgtTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATc                                 <  1:1020983/136‑1 (MQ=255)
                                                                                                                                 tgtTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATc                                 >  2:1020983/1‑136 (MQ=255)
                                                                                                                                      gcctCTTCGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTgg                                                                                               >  1:2046007/4‑69 (MQ=21)
                                                                                                                                      gcctCTTCGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTgg                                                                                               <  2:2046007/66‑1 (MQ=21)
                                                                                                                                      gCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATCCgg                              <  2:709646/134‑1 (MQ=255)
                                                                                                                                      gCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATCCgg                              >  1:709646/1‑134 (MQ=255)
                                                                                                                                      gCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATCCGGGTCCTTGACGCGGTGa              >  1:2041503/1‑150 (MQ=255)
                                                                                                                                         tCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATCCGGGTCCTTGACGCGGTGAAGt           <  2:530079/150‑1 (MQ=255)
                                                                                                                                         tCTTCGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATCCGGGTCCTTGACGCGGTGAAGt           >  1:1679360/1‑150 (MQ=255)
                                                                                                                                           ttCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATCCGGGTCCTTGACGCGGTGAAGTgg         >  2:793175/1‑150 (MQ=255)
                                                                                                                                           ttCGCGGGCAAGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATCCGGGTCCTTGACGCGGTGAAGTgg         >  1:1152726/1‑150 (MQ=255)
                                                                                                                                           ttCGCGGGCAAGCCAGCGAAGAGGCCGGTACAGGTTTCGTGGACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATCCGGGTCCTTGACGCGGTGAAGTgg         >  1:1663078/1‑150 (MQ=255)
                                                                                                                                             cgcgGGCTTGCCCGCGCAGAGGCCGGTACAGGTTTCGTGGACGAGAAAGTAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATCCGGGTCCTTGACGCGGTGAAGTGGga       <  2:2092801/150‑1 (MQ=255)
                                                                                                                                             cgcgGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATCCGGGTCCTTGACGCGGTGAAGTGGga       <  2:2407204/150‑1 (MQ=255)
                                                                                                                                              gcgGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATCCGGGTCCTTGACGCGGTGAAGTGGgac      >  2:2397403/1‑150 (MQ=255)
                                                                                                                                                gggCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGAc                                        <  1:1921397/114‑1 (MQ=255)
                                                                                                                                                gggCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATCCGGGTCCTTGACGCGGTGAAGTGGgacga    <  1:2317601/150‑1 (MQ=255)
                                                                                                                                                gggCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATCCGGGTCCTTGACGCGGTGAAGTGGgacga    <  1:2397403/150‑1 (MQ=255)
                                                                                                                                                 ggCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATCCGGGTCCTTGACGCGGTGAAGTGGgacgac   <  2:1190557/150‑1 (MQ=255)
                                                                                                                                                  gCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATCCGGGTCCTTGACGCGGTGAAGTGGGACGaca  >  2:873119/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                  
CGGAGGACAACGGCGACGGCGTGCTGATCGACAGCCCGGCGGCGCGGGTGCTGGCCTACCTGGACGACCCGGCCAACTCCGACCTG‑TTCGTCGAAGTGGCGCGGTTCCAGCGCTCGGGCAAATGACCGTGTTGGCGTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGTTTCGTGTACTAGAAAGGAGTTCCCGGTGGACGAATACCAGCAAACCATCCGCGCCCTGTCCGACCGCATCGTCGCGGCACAGACGCCGATCCGGGTCCTTGACGCGGTGAAGTGGGACGACA  >  NC_002947/1704531‑1704825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑