Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,897,249 T→A 6.5% intergenic (‑60/+84) PP_mr24 ← / ← rdgC mini‑ykkC regulatory region/recombination‑associated protein RdgC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,897,2490TA 6.5% 275.8 / 9.2 93intergenic (‑60/+84)PP_mr24/rdgCmini‑ykkC regulatory region/recombination‑associated protein RdgC
Reads supporting (aligned to +/- strand):  ref base T (45/41);  new base A (4/2);  total (49/44)
Fisher's exact test for biased strand distribution p-value = 6.81e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.59e-01

GATGATCCAGGACATGAGTGTGTCTCCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCTTCACCACCCAGCGCCTCGAACAGCACCGGCAGGAATTC  >  NC_002947/1897101‑1897392
                                                                                                                                                    |                                                                                                                                               
gatgatCCAGGACATGAGTGTGTCTCCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTa                                                                                                                                                <  2:1345425/150‑1 (MQ=255)
gatgatCCAGGACATGAGTGTGTCTCCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTa                                                                                                                                                >  2:723778/1‑150 (MQ=255)
   gatCCAGGACATGAGTGTGTCTCCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTAAAAAAGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCa                                                                                                                                             >  1:1206078/1‑150 (MQ=255)
    atCCAGGACATGAGTGTGTCTCCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTcaccac                                                                                                                                            >  1:257044/1‑150 (MQ=255)
     tCCAGGACATGAGTGTGTCTCCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGTAAGGGGTTACCACt                                                                                                                                           >  1:941201/1‑150 (MQ=255)
         ggACATGAGTGTGTCTCCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCa                                                                                                                                       <  2:1634429/150‑1 (MQ=255)
             aTGAGTGTGTCTCCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGgcg                                                                                                                                   >  2:1261000/1‑150 (MQ=255)
              tGAGTGTGTCTCCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGTGGTAACCCCTTGCAGgcgc                                                                                                                                  <  1:1758711/150‑1 (MQ=255)
                aGTGTGTCTCCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCgg                                                                                                                                <  2:1541214/150‑1 (MQ=255)
                aGTGTGTCTCCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGACTGCAAGGGGTTACCACTTGCAGGCGCgg                                                                                                                                <  1:1180939/150‑1 (MQ=255)
                    tgtCTCCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGttt                                                                                                                            >  2:1124415/1‑150 (MQ=255)
                      tctcCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTAc                                                                                                                          >  2:1788952/1‑150 (MQ=255)
                       ctcCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTAcc                                                                                                                         >  1:85560/1‑150 (MQ=255)
                            tCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCa                                                                                                                                       <  1:2369784/131‑1 (MQ=255)
                            tCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCa                                                                                                                                       >  2:2369784/1‑131 (MQ=255)
                             cGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGaa                                                                                                                   <  1:332147/150‑1 (MQ=255)
                               tttGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAaga                                                                                                                 >  1:2006164/1‑150 (MQ=255)
                                  gAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACt                                                                                                                                           <  1:1810100/121‑1 (MQ=255)
                                  gAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACt                                                                                                                                           >  2:1810100/1‑121 (MQ=255)
                                   aaTGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGcc                                                                                                             >  1:1644199/1‑150 (MQ=255)
                                          gggCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTg                                                                                                      <  2:870832/150‑1 (MQ=255)
                                          gggCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTg                                                                                                      >  1:1284611/1‑150 (MQ=255)
                                           ggCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTgg                                                                                                     >  1:2296498/1‑150 (MQ=255)
                                           ggCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTgg                                                                                                     <  2:1644199/150‑1 (MQ=255)
                                           ggCCGTCCCCGGAGTGGGCACGCGGTGCGTCGTGAGGTCGTCCGCACCGTGGGCACCATGGTGCCTGTGTGCGGCCTTGCGGGCAAGACCGCGCCGGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTgg                                                                                                     <  2:340908/150‑1 (MQ=255)
                                             ccGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCg                                                                                                            <  1:85679/141‑1 (MQ=255)
                                             ccGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCg                                                                                                            >  2:85679/1‑141 (MQ=255)
                                                   ccGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAAc                                                                                             <  1:1884055/150‑1 (MQ=255)
                                                   ccGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAAc                                                                                             >  1:2264203/1‑150 (MQ=255)
                                                     ggAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGa                                                                                           <  1:2033608/150‑1 (MQ=255)
                                                     ggAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGa                                                                                           <  2:85560/150‑1 (MQ=255)
                                                     ggAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTAGCAGAAAACGa                                                                                           <  1:1835621/150‑1 (MQ=255)
                                                          ggTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTCACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAg                                                                                      <  2:257044/150‑1 (MQ=255)
                                                           atCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTACCTGTCTGCGGCCTTGCGGGCAGGACCGCGCCTGCAAGGGGTTACCACTTGCCGGCGCGGGTGTACCCGCGACGACGACGGAGGTGGCGCAAAACGATGCacg                                                                                     >  1:881617/2‑148 (MQ=255)
                                                            tCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGc                                                                                    <  1:1261000/150‑1 (MQ=255)
                                                              atgcgGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGAGTCAGGCCa                                                                                  >  2:861468/3‑150 (MQ=255)
                                                                       acggtGAGGACGACCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTa                                                                                                                                                >  2:8136/4‑79 (MQ=255)
                                                                       acggtGAGGACGACCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTa                                                                                                                                                <  1:8136/76‑1 (MQ=255)
                                                                          gtGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCAttt                                                                      >  1:2166218/1‑150 (MQ=255)
                                                                           tGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGCTTTTCCCGCTAAGATGCCGGTGCTCGCAGAAAACGATTCAGGCCAGCACCTGGAtttt                                                                     >  2:1144811/1‑149 (MQ=255)
                                                                              ggTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATa                                                                  <  1:1018045/150‑1 (MQ=255)
                                                                              ggTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATa                                                                  >  1:1891188/1‑150 (MQ=255)
                                                                               gtcgtcCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAAc                                                                                             >  1:1045356/1‑122 (MQ=255)
                                                                               gtcgtcCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAAc                                                                                             <  2:1045356/122‑1 (MQ=255)
                                                                               gtcgtcCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATAc                                                                 <  2:1284611/150‑1 (MQ=255)
                                                                               gtcgtcCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATAc                                                                 <  2:1163420/150‑1 (MQ=255)
                                                                                tcgtcCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATAcc                                                                >  1:1491110/1‑150 (MQ=255)
                                                                                  gtcCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCaa                                                              >  1:1526400/1‑150 (MQ=255)
                                                                                  gtcCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGGGCTGGCAGAAAACGATTCAGGCCAGCGCCTGCATGTCATACCaa                                                              >  1:153401/1‑150 (MQ=255)
                                                                                   tcCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAAt                                                             >  1:999038/1‑150 (MQ=255)
                                                                                           gTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAACAGGAGTCAGGCCAGCACCTGCATTTCATACCAATCAGAcccc                                                     >  1:1840936/1‑150 (MQ=255)
                                                                                           acaggCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGAcccc                                                     >  2:2345446/4‑150 (MQ=255)
                                                                                            tGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTg                                                                                                                                         <  1:1280046/65‑1 (MQ=255)
                                                                                            tGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTg                                                                                                                                         >  2:1280046/1‑65 (MQ=255)
                                                                                             aggCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCa                                                           >  1:1480219/2‑142 (MQ=255)
                                                                                             aggCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCa                                                           <  2:1480219/141‑1 (MQ=255)
                                                                                               gCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATAc                                                                 <  1:1177053/134‑1 (MQ=255)
                                                                                               gCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATAc                                                                 >  2:1177053/1‑134 (MQ=255)
                                                                                               gCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGc                                                 <  1:2192750/150‑1 (MQ=255)
                                                                                                   cATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGaa                                             >  2:1268530/1‑150 (MQ=255)
                                                                                                   cATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGaa                                             >  1:1375008/1‑150 (MQ=255)
                                                                                                       gTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAAtctc                                         <  1:2345446/150‑1 (MQ=255)
                                                                                                          ccTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGTAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCTTc                                      <  2:941201/150‑1 (MQ=255)
                                                                                                            tGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCACGGAACTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCTTcac                                    <  1:723778/150‑1 (MQ=255)
                                                                                                              tCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCTTcacca                                  <  2:1896868/150‑1 (MQ=255)
                                                                                                                    gCCTTGCGGGCAAGACCGCGCTTGCACGGGAATGTTTCTGGGAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCTTCACCACCCAgc                            <  2:1840936/150‑1 (MQ=255)
                                                                                                                            ggCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCa                                                           >  1:1772135/1‑111 (MQ=255)
                                                                                                                            ggCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCa                                                           <  2:566486/111‑1 (MQ=255)
                                                                                                                            ggCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCa                                                           >  1:566486/1‑111 (MQ=255)
                                                                                                                            ggCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCa                                                           <  2:1772135/111‑1 (MQ=255)
                                                                                                                            ggCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCTTCACCACCCAGCGCCTCGaa                    <  1:1788952/150‑1 (MQ=255)
                                                                                                                             gCAAGTCCGCTCCTGCAAGGAGTTACCACTTGCAGGCGCGGGCTTACCAGCGAATAGGCCGGTGCTGGCAGAAAACGATTAAGGCCAGCACCTGCATTTCATACCAATCCGACCCCTCGCGGAACCCCTTCACCACCCCCCTCCCCGAAc                   >  2:862207/1‑150 (MQ=255)
                                                                                                                             gCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCTTCACCACCCAGCGCCTCGAAc                   >  2:1929225/1‑150 (MQ=255)
                                                                                                                              cAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCCAGCGGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTGCATACCAATCAGACCCCTTGCGGAATCTCTTCACCACCCAGCGCCTCGAACa                  >  1:1636513/1‑150 (MQ=255)
                                                                                                                               aaGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCtt                                       <  1:2281559/128‑1 (MQ=255)
                                                                                                                               aaGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCtt                                       >  2:2281559/1‑128 (MQ=255)
                                                                                                                                 gACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCTTCACCACCCAGCGCCTCGAACAGcc               >  2:441272/1‑149 (MQ=255)
                                                                                                                                  aCCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCTTCACCACCCAGCGCCTCGAACAGCAc              <  2:2006164/150‑1 (MQ=255)
                                                                                                                                   ccGCGCCTGCAAGTGGTAACCCCTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCTTCACCACCCAGCGCCTCGAACAGCAcc             >  2:1364389/1‑150 (MQ=255)
                                                                                                                                    cgcgCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCTTCACCACCCAGCGCCTCGAACAGCACCg            <  2:905475/150‑1 (MQ=255)
                                                                                                                                        gcggCAAGGGGTTACCAGTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGCTTCAGGCCAGCACCTGCATTTCGTACGACTCAGACCCCTTGCGGAATCTCTTCACCACCCAGCGCCTCGAACAGCACCGGCAg        <  2:579820/147‑1 (MQ=255)
                                                                                                                                         cTGCAAGTGGTAACCCCTTGCAGGCGCGGTCTTGCCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCTTCACCACCCAGCGCCTCGAACAGCACCGGCAgg       >  1:2026010/1‑150 (MQ=38)
                                                                                                                                          tGCAAGTGGTAACCCCTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATa                                                                  >  2:1896419/1‑90 (MQ=37)
                                                                                                                                          tGCAAGTGGTAACCCCTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATa                                                                  <  1:1896419/90‑1 (MQ=37)
                                                                                                                                          tGCAAGTGGTAACCCCTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCTTCACCACCCAGCGCCTCGAACAGCACCGGCAGGa      >  2:1526416/1‑150 (MQ=255)
                                                                                                                                          tGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCTTCACCACCCAGCGCCTCGAACAGCACCGGCAGGa      >  1:946755/1‑150 (MQ=255)
                                                                                                                                          tGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCTTCACCACCCAGCGCCTCGAACAGCACCGGCAGGa      >  1:5035/1‑150 (MQ=255)
                                                                                                                                           gCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCTTCACCACCCAGCGCCTCGAACAGCACCGGCAGGaa     <  2:2264203/150‑1 (MQ=255)
                                                                                                                                            cAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCTTCACCACCCAGCGCCTCGAACAGCACCGGCAGGAAt    >  1:1055138/1‑150 (MQ=255)
                                                                                                                                             aaGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCtt                                       <  2:1012063/114‑1 (MQ=255)
                                                                                                                                             aaGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCtt                                       >  1:1012063/1‑114 (MQ=255)
                                                                                                                                             aaGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCTTCACCACCCAGCGCCTCGAACAGCACCGGCAGGACtt   >  2:1450023/1‑150 (MQ=255)
                                                                                                                                              aGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGTAATCGCTTCACCACCCAGCGTCTCGAACAGCACCGGCAGGAATTc  <  2:97079/150‑1 (MQ=255)
                                                                                                                                              aGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGACTGTTGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAACCTCTTCACCACCCAGCGCCTCGAACAGCACCGGCAGGAATTc  <  1:1124415/150‑1 (MQ=255)
                                                                                                                                                   ttACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCa                                                                    <  2:1595887/79‑1 (MQ=255)
                                                                                                                                                   ttACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCa                                                                    >  1:1595887/1‑79 (MQ=255)
                                                                                                                                                    tACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCAtt                                                                       <  2:1574036/75‑1 (MQ=255)
                                                                                                                                                    tACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCAtt                                                                       >  1:1574036/1‑75 (MQ=255)
                                                                                                                                                    |                                                                                                                                               
GATGATCCAGGACATGAGTGTGTCTCCATCGTTTGAATGATGGGGCCGTCCCCGGAGTGGTCACGCGGTGCGTCGTGAGGTCGTCCTCACCGTGGGCACCATGGTGCCTGTCTGCGGCCTTGCGGGCAAGACCGCGCCTGCAAGGGGTTACCACTTGCAGGCGCGGGTTTACCCGCGAAGAGGCCGGTGCTGGCAGAAAACGATTCAGGCCAGCACCTGCATTTCATACCAATCAGACCCCTTGCGGAATCTCTTCACCACCCAGCGCCTCGAACAGCACCGGCAGGAATTC  >  NC_002947/1897101‑1897392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: