| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,955,253 | T→A | 12.3% | intergenic (+40/‑153) | PP_1752 → / → PP_1753 | hypothetical protein/DMT superfamily permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,955,253 | 0 | T | A | 12.3% | 302.4 / 31.9 | 114 | intergenic (+40/‑153) | PP_1752/PP_1753 | hypothetical protein/DMT superfamily permease |
| Reads supporting (aligned to +/- strand): ref base T (51/49); new base A (6/8); total (57/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.51e-01 | |||||||||||
Only 100 of 114 total aligned reads displayed.
CCTTGGACGCTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTG‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACGGGCTTGATCGAG > NC_002947/1955109‑1955399 | ccTTGGACGCTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTG‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCcg > 1:2367370/1‑150 (MQ=255) cTTGGACGCTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTG‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCcgc < 2:1173466/150‑1 (MQ=255) aCGCTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTG‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTAAACCCGCGaagc < 1:2336796/150‑3 (MQ=255) cGCTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTG‑CGCACAATCAACCAGGCGCTTGAGGCGGGGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAgg < 1:287812/150‑1 (MQ=255) cTGGTGGAGGCCACTGACAAGCGCTGGGCGCGGGTGAGGGCAACGTGGAACAAGCTACTA‑TCACTTTGGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGAAGCTTAGAGCGTTTACCCGCGAAAgtgt < 2:2367370/150‑1 (MQ=255) cTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTG‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGt < 1:254180/150‑1 (MQ=255) tggtggAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTG‑CGCACAATCAACCAGTCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTAACCGCGAAAGGGTc > 2:300059/1‑150 (MQ=255) ggtggAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTG‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTGCTGACCCTTTCGCGGGTAAACCCGCGaagcggcca < 2:1673722/150‑8 (MQ=37) ggCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTG‑CGCACAATCCACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTGCTGACCCTTTCGCGGGTAAACCCGCGAAGCGGCCAGAACAg < 1:1452042/150‑1 (MQ=25) ggCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTG‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAg < 2:1292745/150‑1 (MQ=255) gCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTG‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAgg < 1:449924/150‑1 (MQ=255) ccAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTG‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGc > 1:19869/1‑150 (MQ=255) ccAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTG‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGAACAATACTTTTTTGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGc > 1:1971063/1‑150 (MQ=255) cAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTG‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACACGAAACAGGAGCTCGT‑ATGCCGTC‑TTCTGCTTGCCGCTTCGCGGGTTTACCCGCGACAGGGTCAGCACAGGCa > 1:2112381/1‑150 (MQ=255) cAAGCGCTGGGCGCGGGTGAAGGTGGTG‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCt < 2:37315/150‑1 (MQ=255) aaGCGCTGGGCGCGGGTGAAGGTGGTG‑CGCACAATCAACCAGTCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTA‑CTCCCAGCCTGCTG‑TTCCCGGCGTTAGTGGCGAAAGGGTCAGCACAGGCAACACCTc < 1:300059/150‑1 (MQ=255) aaGCGCTGGGCGCGGGTGAAGGTGGTG‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTAAACCCGCGaa > 2:852805/1‑127 (MQ=255) aaGCGCTGGGCGCGGGTGAAGGTGGTG‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTAAACCCGCGaa < 1:852805/127‑1 (MQ=255) gggCGCGGGTGAAGGTGGTG‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGTCTCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAg < 1:1356943/150‑1 (MQ=255) ggCGCGGGTGAAGGTGGTG‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGc > 1:1501632/1‑150 (MQ=255) ggTGAAGGTGGTG‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGcc > 2:368703/1‑150 (MQ=255) tGAAGGTGGTG‑CGCACAATCAACCAGGCTTCTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGcccc > 1:1023939/1‑150 (MQ=255) gAAGGTGGTG‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCa > 1:1764146/1‑150 (MQ=255) gtggtg‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGGAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAg > 2:1024820/1‑150 (MQ=255) gtggtg‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGc < 1:978073/137‑1 (MQ=255) gtg‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAANAAt < 2:1501632/150‑1 (MQ=255) gtg‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCAAAAAGAAt > 2:1315741/1‑150 (MQ=255) gtg‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACAATTCCACCCAGCCATGCCCCAAAAGAAt < 1:2157355/150‑1 (MQ=255) cgcACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGAc < 1:68868/150‑1 (MQ=255) cgcACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGAc > 1:1005953/1‑150 (MQ=255) caATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGATTTCGTCTGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCtga < 2:585003/150‑1 (MQ=255) aTCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAgg < 1:417297/108‑1 (MQ=255) aaCCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAAt > 2:1472210/1‑150 (MQ=255) aaCCAGGCGATTGAGGCGGCGTTTGCGAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑GTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAAt > 2:628892/1‑150 (MQ=255) aCCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTAAACCCGCGaa > 2:804901/1‑90 (MQ=255) aCCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTAAACCCGCGaa < 1:804901/90‑1 (MQ=255) cAGGCGCTTGAGGCGGCGTTTGCGAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCAGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCGCCGAAAGAATGACCtgatgagatct > 2:1193733/1‑145 (MQ=255) cAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCa < 2:824248/117‑1 (MQ=255) cAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCa > 1:824248/1‑117 (MQ=255) cAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCt > 1:1491179/1‑150 (MQ=255) gcgcTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTAAAAGCTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCtttt < 1:147841/150‑1 (MQ=255) gcTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAAt > 1:1262192/1‑130 (MQ=255) gcTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAAt < 2:1262192/130‑1 (MQ=255) ttGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGACGTTA‑C‑CCGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCg < 1:855204/150‑1 (MQ=255) gAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCACCAGAATGACCTGATGAATTCTTTTCTCGGc < 1:1024820/150‑1 (MQ=255) gAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCg > 1:2057556/1‑148 (MQ=255) gAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCg < 2:2057556/148‑1 (MQ=255) gTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCa < 1:1315741/150‑1 (MQ=255) cAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCaa < 2:2095918/82‑1 (MQ=255) cAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCaa > 1:2095918/1‑82 (MQ=255) cAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGCTGAAGTCTTTTCTCGGCACTCTCCACCGtct > 1:691/1‑150 (MQ=255) cAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGtct > 2:944805/1‑150 (MQ=255) cAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGtct > 1:2277430/1‑150 (MQ=255) aaGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGaa < 2:375423/110‑1 (MQ=255) aaGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGtctc > 1:1017638/1‑150 (MQ=255) aGCACAAGAAATAGCCGAAGGTGCAGGAG‑T‑TTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTctct < 1:793/150‑1 (MQ=255) aGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTctct < 2:942777/150‑1 (MQ=255) cacnAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGt > 2:1496899/1‑150 (MQ=255) cacaAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTAAACCCGCGaa < 1:810996/61‑1 (MQ=37) acaAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGtc > 1:1158432/1‑150 (MQ=255) caAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGtcc > 2:1976210/1‑150 (MQ=255) caAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCGCGGCACTCTCCACCGTCTCTGtcc < 1:944805/150‑1 (MQ=255) aaGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGca < 2:951241/68‑1 (MQ=255) aaGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGca > 1:951241/1‑68 (MQ=255) gAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGCATGACCTGATGAATTCTTTTCGCGGCACTCTCCACCGTCTCTGtcctcc > 2:896636/1‑150 (MQ=255) gAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGtcctcc < 2:1764146/150‑1 (MQ=255) aaaTAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCa < 2:1023939/150‑1 (MQ=255) gCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAAcccc < 1:368703/150‑1 (MQ=255) cGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCaa < 2:320002/65‑1 (MQ=255) cGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCaa > 1:320002/1‑65 (MQ=255) gAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTa > 2:617525/1‑150 (MQ=255) tGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAAtt < 2:1017638/150‑1 (MQ=255) aGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTca > 1:1471237/1‑150 (MQ=255) aGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTca > 1:1471295/1‑150 (MQ=255) ttG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTcaaca > 2:69550/1‑150 (MQ=255) g‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCaacaac < 2:1325513/150‑1 (MQ=255) cTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGtct < 2:91812/118‑1 (MQ=255) cTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAAccc > 1:1189859/1‑150 (MQ=255) cTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAAccc > 1:84057/1‑150 (MQ=255) cTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACATACGCCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAAccc > 1:2125256/1‑150 (MQ=255) gCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACGCCTCCACCCAGCGATGCCCCAAAAGAATGACCTGAGGAATTCTTTTCTCGGCACTCTCACCCGTGTCTGTCCTCCAACCCCGTAGAATTCAGCAACCCCCACCACg > 1:1177066/1‑150 (MQ=255) accctttCGCGGGTAAACCCGCGAAGGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACg > 2:1049061/6‑150 (MQ=255) ccGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCtgat < 2:765880/79‑1 (MQ=255) ccGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCtgat > 1:765880/1‑79 (MQ=255) ccGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACgg < 1:1472210/150‑1 (MQ=255) ccGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACgg < 1:1496899/150‑1 (MQ=255) ccGCTTCGCGGGTTTACCCGCGAAAGGGACCCCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCATCCAACCCCGTAGAATTCAACAACCCCCACCACgg > 1:377317/1‑150 (MQ=255) cGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCaa < 2:2234355/119‑1 (MQ=255) cGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCaa > 1:2234355/1‑119 (MQ=255) cTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACGGGCt < 2:1005953/150‑1 (MQ=255) ttCGCGGGTAAACCCGCGAAGCGGCCAGAACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACGGGCtt < 2:1636808/150‑1 (MQ=38) ttCGCGGGTAAACCCGCGAAAGGGTCAGTACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACGGGCtt > 2:2263347/1‑150 (MQ=255) ttCGCGGGTAAACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAAt > 1:1783383/1‑127 (MQ=255) ttCGCGGGTAAACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAAt < 2:1783383/127‑1 (MQ=255) cgcgGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACGGGCTTGa < 2:2112381/150‑1 (MQ=255) gcgGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACGGGCTTGAt > 2:411300/1‑150 (MQ=255) ggTTTACCCGCGAAAGGGTCAGCACAGTAATCACCTCCTCCCAGCCATGCCCCAACAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACGGGCTTGATCGa < 2:1839144/150‑1 (MQ=255) ggTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAGCCCCGTAGAATTCAACAACCCCCACCACGGGCTTGATCGa < 2:691/150‑1 (MQ=255) gTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACGGGCTTGATCGAg < 2:2277430/150‑1 (MQ=255) gTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCATCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACGGGCTTGATCGAg > 1:515245/1‑150 (MQ=255) | CCTTGGACGCTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTG‑CGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTG‑C‑CTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAAGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACGGGCTTGATCGAG > NC_002947/1955109‑1955399 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |