| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,981,136 | C→A | 11.3% | intergenic (+32/‑268) | rpsA → / → ihfB | 30S ribosomal protein S1/integration host factor subunit beta |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,981,136 | 0 | C | A | 11.3% | 254.3 / 15.5 | 88 | intergenic (+32/‑268) | rpsA/ihfB | 30S ribosomal protein S1/integration host factor subunit beta |
| Reads supporting (aligned to +/- strand): ref base C (37/41); new base A (4/6); total (41/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.30e-01 | |||||||||||
CGAAAGACGACGCTGAAGAGCGCGAAGCTATCCAGAGCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCGCCACTGGCCTATCTAAGCGGTAGACCATTCT > NC_002947/1980989‑1981284 | cGAAAGACGACGCTGAAGAGCGCGAAGCTATCCAGAGCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGNCAAGCANAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTNgg < 1:1658412/150‑1 (MQ=255)cGAAAGACGACGCTGAAGAGCGCGAAGCTATCCAGAGCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCNCgg < 2:1510990/150‑1 (MQ=255) gAAAGACGACGCTGAAGAGCGCGAAGCTATCCAGAGCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCggg > 1:2023000/1‑150 (MQ=255) aaaGACGACGCTGGAGAGCGCGAAGCTATCCAGAGCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGt > 1:1194917/1‑150 (MQ=255) aaGACGACGCTGAAGAGCGCGAAGCTATCCAGAGCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTc < 1:707925/150‑1 (MQ=255) acgacgCTGAAGAGCGCGAAGCTATCCAGAGCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGcc < 2:2023000/150‑1 (MQ=255) cgacgCTGAAGAGCGCGAAGCTATCCAGAGCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCGCCGGGTCGccc < 2:409309/150‑1 (MQ=255) cgacgCTGAAGAGCGCGAAGCTATCCAGAGCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCGAGGGTCGccc < 2:2208254/150‑1 (MQ=255) gacgCTGAAGAGCGCGAAGCTATCCAGAGCCTGAAAAACGCTACGGAAGCTGCTGCCGACAACACCCTGGCTGCGCTGTTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCGAGGGTCGCCC‑t < 1:696959/150‑1 (MQ=255) gAAGAGCGCGAAGCTATCCAGAGCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCGAGGGTCGCCC‑tttttac < 1:821787/150‑3 (MQ=255) cgAAGCTATCCAGAGCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCcgc < 2:1122512/150‑1 (MQ=255) gCTATCCAGAGCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCcgc < 2:1612090/146‑1 (MQ=255) gCTATCCAGAGCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCcgc > 1:1612090/1‑146 (MQ=255) gCTATCCAGAGCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGAcc > 1:2216440/1‑150 (MQ=255) gCTATCCAGAGCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGAcc > 2:1254954/1‑150 (MQ=255) tATCCAGAGCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAACCGCCAAGCAGAACTGAGTTCTCTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAg < 2:1261866/150‑1 (MQ=255) tCCAGAGCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGccc < 2:676034/127‑1 (MQ=255) tCCAGAGCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGccc > 1:676034/1‑127 (MQ=255) agagCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAggtggt > 1:2070155/1‑150 (MQ=255) agagCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAggtggt > 1:1538374/1‑150 (MQ=255) gCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATTGGTAAAAAGGGCGACCCTCGGGTCGCCC‑tttttt > 1:958506/1‑127 (MQ=255) gCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATTGGTAAAAAGGGCGACCCTCGGGTCGCCC‑tttttt < 2:958506/127‑1 (MQ=255) cTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTgcggc < 1:1254954/150‑1 (MQ=255) tGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGCCCAGGTGGTgcggcg > 2:1359319/1‑150 (MQ=255) aaaaaCGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCCGGTGGTGCGGCGGa < 2:1913503/150‑1 (MQ=255) aaaCGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATg > 1:1094640/1‑150 (MQ=255) tCCGGAAGCTGCTGCCGACACCACTATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCActg > 2:1622232/1‑150 (MQ=255) ccGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCActgc < 1:1938605/150‑1 (MQ=255) ggAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCActgctg < 2:660203/150‑1 (MQ=255) ctgcCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGc > 1:1017657/1‑150 (MQ=255) tgcCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCGAGGGTCGCCC‑t < 2:1199178/97‑1 (MQ=255) tgcCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCGAGGGTCGCCC‑t > 1:1199178/1‑97 (MQ=255) gcCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCa < 2:2070155/150‑1 (MQ=255) gACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTc < 1:2314688/88‑1 (MQ=255) gACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTc < 1:2314096/88‑1 (MQ=255) gACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTc > 2:2314096/1‑88 (MQ=255) gACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTc > 2:2314688/1‑88 (MQ=255) gACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCt < 1:718778/150‑1 (MQ=255) caccacCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTc < 2:2216440/150‑1 (MQ=255) accaccATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCGAGGGTCGccc < 1:2166043/89‑1 (MQ=255) accaccATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCGAGGGTCGccc > 2:2166043/1‑89 (MQ=255) ccaccaGGGCTGCGCCGCTGAGCGAAGCAATGGCCAAGCACAACTGAGTTCTGTTTGACCGGTAAAAACGGCGACCCTCAGCTAGGCT‑TTCTTTTTGCTCCGCGACCAGGTGGTGC‑GAGGATGCGCACTGCTGGAACACGCCAGCTTCAg < 1:663265/150‑1 (MQ=255) caccaTGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGACCACGCCAGCTTCAgg > 2:140168/1‑150 (MQ=255) accaTGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAac < 2:1929030/135‑1 (MQ=255) accaTGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAac > 1:1929030/1‑135 (MQ=255) accaTGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGc > 1:289207/1‑150 (MQ=255) ctgcgctgcTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGaa < 1:1258029/150‑1 (MQ=255) tgcgctgcTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCcgc > 2:1548267/1‑93 (MQ=255) tgcgctgcTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCcgc < 1:1548267/93‑1 (MQ=255) gctgctGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCCTTTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGcc > 2:2020736/1‑150 (MQ=255) ctgctgCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCg > 2:1444240/1‑150 (MQ=255) gctgcGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGtt < 1:1359319/150‑1 (MQ=255) gctgcGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGtt < 2:1445785/150‑1 (MQ=255) gctgcGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGtt < 1:1121963/150‑1 (MQ=255) gcgAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAgg > 1:409853/1‑150 (MQ=255) gcgAAGCAATGGCCAAGCAGAACCGAGTCCTGGTGGATTGATCACTCTACCTTTCCCCTTTTCGCCCTTTTTTTTTGCCCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAg < 2:62189/150‑1 (MQ=255) aaGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGTCGACCCGAGGGTCGCCC‑ttt > 1:1892921/1‑67 (MQ=37) aaGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGTCGACCCGAGGGTCGCCC‑ttt < 2:1892921/67‑1 (MQ=37) gCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCgg < 1:933956/150‑1 (MQ=255) aaTGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGaa < 2:2222060/131‑1 (MQ=255) aaTGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGaa > 1:2222060/1‑131 (MQ=255) aaTGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCGGGt > 1:2298768/1‑150 (MQ=255) gCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCGGGTTCAc < 1:1622232/150‑1 (MQ=255) cAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCGGGTTCAccc > 1:1189115/1‑150 (MQ=255) aGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCgg < 1:2326855/140‑1 (MQ=255) aGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCgg > 2:2326855/1‑140 (MQ=255) aGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCGGGTTCACCCGCGaa < 2:1189115/150‑1 (MQ=255) aGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCGGGTTCACCCGCGaa < 2:850181/150‑1 (MQ=255) gAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCgg > 2:1495962/1‑136 (MQ=255) gAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCgg < 1:1495962/136‑1 (MQ=255) tGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCGGGTTCACCCGCGAAGCAgg > 2:2063472/1‑150 (MQ=255) tGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCGCCACt > 1:1349280/1‑150 (MQ=255) tttGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCCCAACAACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGCCGAAGCCCGGTGCAGGAGCGGGTCCACCCGCGAGGCAGGCGCCagcgg > 2:930580/1‑146 (MQ=255) tttGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑CTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCGCCACTgg > 2:1276593/1‑150 (MQ=255) ttGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGCGCGGGTTCACCCGCGAAGCAGGCGCCACTGGc < 2:1349280/150‑1 (MQ=255) tGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCGCCACTGGcc < 2:1538374/150‑1 (MQ=255) gATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGc < 1:1366593/96‑1 (MQ=255) gATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGc > 2:1366593/1‑96 (MQ=255) gTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCGCCACTGGCCTATCTa > 2:2126557/1‑150 (MQ=255) aaaaGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCGCCACTGGCCTATCTAAGc < 1:1444240/150‑1 (MQ=255) aaaGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCggg < 2:98621/112‑1 (MQ=255) aaaGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCggg > 1:98621/1‑112 (MQ=255) aaGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCGCCACTGGCCTATCTAAGCgg < 2:1017657/150‑1 (MQ=255) aGGGCGCCCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCGCCACTGGCCTATCTAAGCGGt < 1:671968/150‑1 (MQ=255) gggCGACCCTCGGGTCGCCC‑TTTTTTTTTTTTCTCTTCCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCGCCACTGGCCTATCTAAGCGGTa > 2:410743/1‑150 (MQ=255) gggCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCGCCACTGGCCTATCTAAGCGGTa > 1:1577044/1‑150 (MQ=255) ggCGACCCGAGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGCACGGGCGGGTTCACCCGCGAAGCAGGCGCCACTGGCCTATCTAAGCGGTAg > 1:1329292/1‑150 (MQ=255) cGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCGCCACTGGCCTATCTAAGCGGTAGAc < 1:1081706/150‑1 (MQ=255) tCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCGCCACTGGCCTATCTAAGCGGTAGACCATTCt > 2:1473586/1‑150 (MQ=255) | CGAAAGACGACGCTGAAGAGCGCGAAGCTATCCAGAGCCTGAAAAACGCTCCGGAAGCTGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATCGGTAAAAAGGGCGACCCTCGGGTCGCCC‑TTTTTTTTGCTCCGCGACCAGGTGGTGCGGCGGATG‑GCACTGCTGGAACACGCCAGCTTCAGGCTGGCGAAGCCCGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCGCCACTGGCCTATCTAAGCGGTAGACCATTCT > NC_002947/1980989‑1981284 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |