BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	2,104,741	C→T	6.8%	E62E (GAG→GAA)	PP_1879 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	2,104,741	0	C	T	6.8%	317.5 / 6.6	108	E62E (GAG→GAA)	PP_1879	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (58/42); new base T (6/2); total (64/44)
Fisher's exact test for biased strand distribution p-value = 4.68e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 108 total aligned reads displayed.

AATAAGCTTGTCGACCGGTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGTTCTGCGGTTACCGGAGCGC  >  NC_002947/2104594‑2104888

aaTAAGCTTGTCGACCGGTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCCGTACGTCATTCCAGTAGAGGACAAGGTATTCCTCATCTATTTCCCGGTGCGAATTTGCCCACGGGGGGAACTc                                                                                                                                                   >  2:339480/1‑150 (MQ=255)

aaTAAGCTTGTCGACCGGTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTc                                                                                                                                                   >  2:1088583/1‑150 (MQ=255)

  tAAGCTTGTCGACCGGTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCa                                                                                                                                                 >  1:1098387/1‑150 (MQ=255)

  tAAGCTTGTCGACCGGTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCa                                                                                                                                                 >  2:1779690/1‑150 (MQ=255)

  tAAGCTTGTCGACCGGTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCa                                                                                                                                                 >  2:573588/1‑150 (MQ=255)

   aaGCTTGTCGACCGGTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCAc                                                                                                                                                >  1:728888/1‑150 (MQ=255)

   aaGCTTGTCGACCGGTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCAc                                                                                                                                                <  1:573588/150‑1 (MQ=255)

   aaGCTTGTCGACCGGTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCAc                                                                                                                                                <  1:1779690/150‑1 (MQ=255)

       ttGTCGACCGGTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAGTTCCACCCgt                                                                                                                                            >  1:2261413/1‑149 (MQ=255)

       ttGTCGACCGGTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGc                                                                                                                                            >  1:1471283/1‑150 (MQ=255)

         gTCGACCGGTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAGTTCCACCCgtgg                                                                                                                                          <  2:2261413/150‑4 (MQ=255)

            gACCGGTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACAAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAgggg                                                                                                                                       <  2:2118399/150‑1 (MQ=255)

             aCCGGTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCTCTTGGTGGAACTCCACCCGCAggggg                                                                                                                                      <  1:2157351/150‑1 (MQ=255)

                     cAATATGAGTAGCTCTGCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGt                                                                                                                              >  2:632915/1‑150 (MQ=255)

                      aaTATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGtt                                                                                                                             >  2:1561142/1‑150 (MQ=255)

                              tAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGaa                                                                                                                     <  2:1098387/150‑1 (MQ=255)

                                 ctctTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTc                                                                                                                  >  2:121040/1‑150 (MQ=255)

                                   ataaaGGTTCGATGGGCGTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTTCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGa                                                                                                                >  2:1731469/5‑150 (MQ=255)

                                    ttCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGAc                                                                                                               <  1:315278/150‑1 (MQ=255)

                                       aGGTTCGATAGGCTTGCTGAAGGTATTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCgt                                                                                                            >  2:1209015/1‑150 (MQ=255)

                                          ttCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGtt                                                                                                         >  2:778552/1‑150 (MQ=255)

                                            cGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTgg                                                                                                       <  1:1088583/150‑1 (MQ=255)

                                            cGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTgg                                                                                                       <  2:729376/150‑1 (MQ=255)

                                            cGATAGGCTTGCTGAAGGTCTTCTTGTCCACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTgg                                                                                                       <  1:727778/150‑1 (MQ=255)

                                             gATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTggg                                                                                                      >  1:2375160/1‑150 (MQ=255)

                                             gATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTAGACCGTGTTggg                                                                                                      >  2:174343/1‑150 (MQ=255)

                                              aTAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAgg                                                                                                                               >  1:1440336/1‑124 (MQ=255)

                                              aTAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAgg                                                                                                                               <  2:1440336/124‑1 (MQ=255)

                                                 ggCTTGCTGAAGGTCTTCTTGTCTACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTc                                                                                                  <  1:121040/150‑1 (MQ=255)

                                                  gCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAGTTCCACCCgtgg                                                                                                                                          <  1:1989561/109‑4 (MQ=255)

                                                  gCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAGTTCCACCCgtgg                                                                                                                                          >  2:1989561/1‑106 (MQ=255)

                                                  gCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGCTTcc                                                                                                 >  2:1181321/1‑150 (MQ=255)

                                                   cTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGTGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTccc                                                                                                >  2:421042/1‑150 (MQ=255)

                                                   cTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTccc                                                                                                <  2:2067561/150‑1 (MQ=255)

                                                    ttGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGCATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTcccc                                                                                               >  1:842544/1‑150 (MQ=255)

                                                        tGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCtt                                                                                           >  1:484201/1‑150 (MQ=255)

                                                        tGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCtt                                                                                           >  1:742314/1‑150 (MQ=255)

                                                        tGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGAGAGAAGATTTCACTAAGATTAAATTTCCCCCCGCAGGGGGGAATAGGGTGCCCGGAACTCGACCAGATTAGCTCTCCCCCCtt                                                                                           >  1:1994625/1‑150 (MQ=255)

                                                          aaGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAgg                                                                                                                               >  2:1801150/1‑112 (MQ=255)

                                                          aaGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAgg                                                                                                                               <  1:1801150/112‑1 (MQ=255)

                                                                ttcttGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCg                                                                                   >  1:607342/1‑150 (MQ=255)

                                                                  cttGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTc                                                                                 <  1:1512951/150‑1 (MQ=255)

                                                                   ttGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTcc                                                                                >  1:1986137/1‑150 (MQ=255)

                                                                         aCCAGTACGTCATGCCAGTAGTGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACg                                                                          >  2:1214579/1‑150 (MQ=255)

                                                                              tACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTACCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAg                                                                                                                                          <  2:1622323/81‑1 (MQ=255)

                                                                                 gTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCCACATCGTCCACCACGCTTGGTAc                                                                  >  2:184043/1‑150 (MQ=255)

                                                                                 gTCATTCCAGGAGAGGAAAAGGTATTCATCATCAATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTAc                                                                  >  2:1057379/1‑150 (MQ=255)

                                                                                  tCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACg                                                                 <  1:1380903/150‑1 (MQ=255)

                                                                                    aTTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGaa                                                                                                                     <  2:1294898/96‑1 (MQ=255)

                                                                                    aTTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGaa                                                                                                                     >  1:1294898/1‑96 (MQ=255)

                                                                                    aTTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGt                                                               >  2:137287/1‑150 (MQ=255)

                                                                                    aTTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGt                                                               <  2:742314/150‑1 (MQ=255)

                                                                                     ttCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGtt                                                              >  1:1305838/1‑150 (MQ=255)

                                                                                        cAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTggg                                                           >  2:1964903/1‑150 (MQ=255)

                                                                                         aGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTgggg                                                          <  2:1741466/150‑1 (MQ=255)

                                                                                         aGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTgggg                                                          >  1:226727/1‑150 (MQ=255)

                                                                                         aGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTgggg                                                          <  1:1561142/150‑1 (MQ=255)

                                                                                                gAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTgg                                                                                                       <  1:373325/98‑1 (MQ=255)

                                                                                                gAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTgg                                                                                                       >  2:373325/1‑98 (MQ=255)

                                                                                                gAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAag                                                   >  2:1747007/1‑150 (MQ=255)

                                                                                                 aaaaGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCGCGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAaga                                                  <  2:943669/150‑1 (MQ=255)

                                                                                                  aaaGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAagag                                                 >  1:1268534/1‑150 (MQ=255)

                                                                                                  aaaGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAagag                                                 <  1:1762383/150‑1 (MQ=255)

                                                                                                   aaGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAagaga                                                <  1:2195469/150‑1 (MQ=255)

                                                                                                     ggTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTc                                                                                                                  <  2:819611/82‑1 (MQ=255)

                                                                                                     ggTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTc                                                                                                                  >  1:819611/1‑82 (MQ=255)

                                                                                                      gTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGtt                                                                                                    >  2:1742955/1‑95 (MQ=255)

                                                                                                      gTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGtt                                                                                                    <  1:1742955/95‑1 (MQ=255)

                                                                                                      gTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGc                                             <  2:607342/150‑1 (MQ=255)

                                                                                                        aTTCCTCATCTATTTCCGGGTGCGAATTTGCCCAAGGGTGGAACTTCATTCGCAGAAGGTAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCg                                           >  2:684172/1‑150 (MQ=255)

                                                                                                             tCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTcc                                      >  2:2233931/1‑150 (MQ=255)

                                                                                                              cATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTTCCCCCTTCAACATCGTCCACCACGCTTg                                                                      <  2:219241/117‑1 (MQ=255)

                                                                                                              cATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTTCCCCCTTCAACATCGTCCACCACGCTTg                                                                      >  1:219241/1‑117 (MQ=255)

                                                                                                              cATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCa                                     <  1:913144/150‑1 (MQ=255)

                                                                                                               aTCTATTTCCGGGTGCGAATTTGCCCACGGGTGTAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAg                                    >  2:1038910/1‑150 (MQ=255)

                                                                                                               aTCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTggggg                                                         >  1:10788/1‑129 (MQ=255)

                                                                                                               aTCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTggggg                                                         <  2:10788/129‑1 (MQ=255)

                                                                                                                      tCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAggg                             <  1:1747007/150‑1 (MQ=255)

                                                                                                                          ggTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTg                         <  1:778552/150‑1 (MQ=255)

                                                                                                                          ggTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTg                         <  2:2375160/150‑1 (MQ=255)

                                                                                                                            tGCGAATTTGCCCACGGGTGGCACTCCACCCGCAGGGGGGCATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGa                       >  1:2264777/1‑150 (MQ=255)

                                                                                                                             gCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAg                      >  1:2435936/1‑150 (MQ=255)

                                                                                                                               gAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGtt                    >  1:1941238/1‑150 (MQ=255)

                                                                                                                               gAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGtt                    >  1:1911943/1‑150 (MQ=255)

                                                                                                                                aaTTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGTTc                   >  1:465654/1‑150 (MQ=255)

                                                                                                                                  tttGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGTTCTg                 <  2:1305838/150‑1 (MQ=255)

                                                                                                                                   ttGCCCACGGGTGGAACTCCACCCGCAGTGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGTTCTGc                <  1:421042/150‑1 (MQ=255)

                                                                                                                                    cccccACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAgg                              <  1:1713814/133‑1 (MQ=255)

                                                                                                                                    cccccACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAgg                              >  2:1713814/3‑135 (MQ=255)

                                                                                                                                       ctgcGGGTGGAGTTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGTTCTGCGGtt            >  2:2239005/4‑150 (MQ=255)

                                                                                                                                       ctgcGGGTGGAGTTCCACCCG‑TGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGCGAGCGCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGTTCTGCGGTTa           >  2:2158449/4‑150 (MQ=255)

                                                                                                                                       ccACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGTTCTGCGGtt            >  1:4742/1‑150 (MQ=255)

                                                                                                                                        cACGGGTGGAACTACACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTg                                                                      >  2:563073/1‑91 (MQ=255)

                                                                                                                                        cACGGGTGGAACTACACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTg                                                                      <  1:563073/91‑1 (MQ=255)

                                                                                                                                             gTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGTTCTGCg               <  2:495137/141‑1 (MQ=255)

                                                                                                                                             gTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGTTCTGCg               >  1:495137/1‑141 (MQ=255)

                                                                                                                                              tGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGACCAGTTCAGGGGTTGGAGTTCTGCGGTTACCGGAg     >  1:1827375/1‑150 (MQ=255)

                                                                                                                                               ggAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGTTCTGCGGTTACCGGAgc    <  2:484201/150‑1 (MQ=255)

                                                                                                                                                 aaCTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGTTCTGCGGTTACCGGAgcgc  >  2:386093/1‑150 (MQ=255)

                                                                                                                                                 aaCTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAATTCTGCGGTTACCGGAgcgc  <  1:1209015/150‑1 (MQ=255)

AATAAGCTTGTCGACCGGTACCAATATGAATAGCTCTTCAGGTTCGATAGGCTTGCTGAAGGTCTTCTTGTCGACCAGTACGTCATTCCAGTAGAGGAAAAGGTATTCCTCATCTATTTCCGGGTGCGAATTTGCCCACGGGTGGAACTCCACCCGCAGGGGGGAATAGGTTGCCCGGAACTCGACCGTGTTGGGTTTCCCCCCTTCAACATCGTCCACCACGCTTGGTACGGTTGGGGGGACAAGAGAGGCCGAGTCCAGTTCAGGGGTTGGAGTTCTGCGGTTACCGGAGCGC  >  NC_002947/2104594‑2104888

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`