Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,544,5310CA43.3% 108.5 / 241.0 179intergenic (+48/+66)mdfA/ampGmultidrug MFS transporter/muropeptide permease AmpG
Reads supporting (aligned to +/- strand):  ref base C (39/62);  new base A (32/45);  total (72/107)
Fisher's exact test for biased strand distribution p-value = 7.58e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.42e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 184 total aligned reads displayed.

CTGCATTTTGCCCTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGG  >  NC_002947/1544382‑1544678
                                                                                                                                                      |                                                                                                                                                   
gtgcATTTTGCCCTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTacac                                                                                                                                                     <  2:4203748/149‑1 (MQ=255)
   tttttgGCCGTGGGGGGGGGGGGGGGGGGGGGGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACACAgg                                                                                                                                                  <  1:4788110/148‑1 (MQ=38)
     ttttGCCCTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCACATCGCGGGTAAA‑CCCCCGCCAAAACAGGgc                                                                                                                                                >  1:4646305/1‑150 (MQ=255)
            cTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCCCGCCTACACACGgccgcgccg                                                                                                                                         >  2:4105774/1‑150 (MQ=255)
             tGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCGCGTCGCGGGGAAA‑CCCGCACCTCCACACGggcccgcccc                                                                                                                                        >  2:1823032/1‑148 (MQ=255)
                gggcggGGGTGGGGGGGGCGGTGGCGCTGTGGCGGCTGGGGTTTGTGGTGGGTGTGGGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCttt                                                                                                                                     <  2:3398387/149‑1 (MQ=39)
                gggcggGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCttt                                                                                                                                     <  2:2075430/149‑1 (MQ=255)
                cgggggGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCttt                                                                                                                                     <  2:3397707/150‑1 (MQ=255)
                cggcggGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCttt                                                                                                                                     <  2:1577851/150‑1 (MQ=255)
                cggcggGGGTGGCGGGGGCGTGGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGTGGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCttt                                                                                                                                     <  2:5034363/150‑1 (MQ=255)
                   gggggggggggggggCGTGGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                  <  1:2468481/149‑1 (MQ=25)
                   gggggggggCGGGGGCGTGGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                  <  2:3347472/149‑1 (MQ=37)
                   ggggggTGGGGGGGGCGGTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGGGGGCGGCCTGGGGACGGGGCTGGAGCTCGATAATCGGTAGTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                  <  2:4030623/149‑1 (MQ=25)
                   ggggggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                  <  1:4150563/149‑1 (MQ=37)
                   ggggggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                  <  1:1312799/149‑1 (MQ=37)
                   ggggggTGGCGGGGGCGTTGGCGCTGTGGCCGCCGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTa                                                                                                                                  <  2:3661867/149‑1 (MQ=255)
                    ggggggggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTAg                                                                                                                                 <  1:2879134/150‑1 (MQ=255)
                    ggggggggCGGGGGCGGGGGCGCTGTGGCCGCGGTGGTGGGGGGGGGGGGGGCGGCCTGGGGACGGGGCTGTAGCTCGATCATCGGTAGTGCCGGGGCCGGCCTCTTCGCGGGTAAC‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTAg                                                                                                                                 <  2:3809894/150‑1 (MQ=255)
                    ggggggggCGGGGGCGGGGGCGCGGGGGCCGCGGGGGTGGGGGGGGGGGGGGCGGCCTGGGGCAGGGGCTGTAGCTCGATACTCGGTATTGCCGGGGCCGGCCGCTTCGCGGGTAAC‑CCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAg                                                                                                                                 <  2:216756/150‑1 (MQ=12)
                    gggggTGGGGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGACCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTAg                                                                                                                                 <  1:3219734/150‑1 (MQ=255)
                    gggggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGGGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTAg                                                                                                                                 <  2:901465/150‑1 (MQ=255)
                     ggggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGTAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTAgg                                                                                                                                <  2:2319678/150‑1 (MQ=255)
                      ggggggggggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGa                                                                                                                               <  1:469833/150‑1 (MQ=25)
                      ggggggggggggCGTGGGCGCTGTGGCCGGTGTGTTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGa                                                                                                                               <  1:2227790/150‑1 (MQ=25)
                      gggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGa                                                                                                                               <  2:2063005/150‑1 (MQ=37)
                         tGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCg                                                                                                                            <  1:4297718/150‑1 (MQ=37)
                          ggggggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                           <  1:5004799/147‑1 (MQ=25)
                          ggggggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                           <  2:1806048/147‑1 (MQ=25)
                          ggggggggCGTTGGCGCTGGGGCCGCGGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATACTCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                           <  2:3495146/147‑1 (MQ=25)
                          ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGTTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                           <  2:1953014/150‑1 (MQ=25)
                          ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCgg                                                                                                                           <  2:2678807/150‑1 (MQ=255)
                          ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                           <  1:521439/150‑1 (MQ=37)
                          ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                           <  2:2574940/150‑1 (MQ=37)
                          ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGGAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                           <  2:3009696/150‑1 (MQ=25)
                          ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGGGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATGGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCgg                                                                                                                           <  2:2994214/150‑1 (MQ=255)
                          ggCGGGGGCGTTGGCGCTGGGGCCGCTGTGGTTTGTGGTGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCgg                                                                                                                           <  1:3268130/150‑1 (MQ=255)
                           gCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGGGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCggg                                                                                                                          <  1:2637031/150‑1 (MQ=255)
                            ggggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCTGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGt                                                                                                                         <  1:3116549/149‑1 (MQ=25)
                            cGGGGGCGTTGGCGCTGGGGCCGCTGTGGTTTGTGGGGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGt                                                                                                                         <  1:3331525/150‑1 (MQ=25)
                             gggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTTAA‑ACCCCGACTACACACGGCCCCGCCCCGTTGTAGGAGCGGGtt                                                                                                                        >  2:3035337/1‑150 (MQ=255)
                              ggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGttt                                                                                                                       >  2:3384285/1‑150 (MQ=255)
                                    ttGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCcgc                                                                                                                 <  1:3384285/150‑1 (MQ=255)
                                         gcTGTGGCGGCTGGGGTTTGTGGTGGGGGGGCGGCCTGGGGATGGGGCTGTCGCTCGATAATCGGTATTGCCGGGGCCGGCCTGTTCGCGGGTAAA‑CCCGCTCCTACCCTGGGCCGCGCCGCTTTGTAGGAGGGGGTTTACCCGCGAaga                                                                                                            <  2:1875610/150‑1 (MQ=37)
                                         gcTGTGGCCGCTGGGGTTGGTGGGGGGGGGGCGGCCGGGGGAAGGGGCTGTAGCTCGATAAGCGGTATGGCGGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACACCGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAaga                                                                                                            <  2:3566722/150‑1 (MQ=37)
                                         gcTGTGGCCGCTGGGGTTGGGGGGGGGTGGGCGGCCGGGGGACGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCGGCGCGGGTAAC‑CCCGCTCCTCCACCGGGCCGCGCCGCTTGGTCGGAGCGGGTTTCCCCGCGAaga                                                                                                            <  2:3267513/150‑1 (MQ=255)
                                             gggCCGCTGGGGTTGGGGGGGGGGGGGGGGCCGGGGGACGGGGCTGTAGCTCGATACTGGGTATGGCCGGGGCCGGCCTCGGCGCGGGTAAA‑CCCGCTCCTCCACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGcc                                                                                                        <  2:2485652/149‑1 (MQ=21)
                                               gCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAg                                                                                                                                 <  1:1107852/123‑1 (MQ=25)
                                               gCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAg                                                                                                                                 >  1:2868119/1‑123 (MQ=25)
                                                              ggggggggggCGGCCGGGGGAGGGGGCTGGCGCTCGATACGCGGTTTGGCGGGGGCGGGCCTCTTCGCGGGTAAA‑CCCGCTCCTCCACCGGGCCGCGCCGCTTGGTTGGCGGGGTTTTACCCGCGAAGAGGCCAGCACAGGCAATACaaa                                                                                       <  2:610288/147‑1 (MQ=21)
                                                               gtgggtggGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGGGAA‑ACCGCACCTACACAGGGCCCCCCCGCGGTGGTGGGGCCGGGTTACCCCCGCAGAGGCCCCCACACGCcaaacaaac                                                                                      >  2:4412298/1‑149 (MQ=255)
                                                                  ggggggCGGCCGGGGGAGGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTACA‑CCGGCTCCTACACTGGGCGGCGCCGCTTCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCtt                                                                                   <  2:4270016/147‑1 (MQ=37)
                                                                   gtgggCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTc                                                                                  <  2:2888239/150‑1 (MQ=255)
                                                                                ggATGGGGGTGTAGCTCGATAATCGGTTTTGCGGGGGCGGGCCTCTTCGCGGGTAAC‑CCCGCCCCTACACTGGGCGGCGCCGCTTTGTCGGTGCGGTTTACCCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGc                                                                     <  1:2923219/150‑1 (MQ=255)
                                                                                       gCTGGAGCTCGATAATCGGTATGGCCGGGGCCGGCCTCTGCGCGGGTAAA‑CCCGCTCCCACCCCGGGCCGCGCCGCTTTGTCGGAGGGGGTTTCCCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAg                                                              <  2:2418826/150‑1 (MQ=38)
                                                                                                                        gccTCTTCGCGGGTAAA‑CCCGCTCCGACACAGGGCCGCGCCGCGTGGGAGGAGCGGGGTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCGTCAGGGCCGCTCAGCCCCCCAGTGGTCGGCCGCCACCGGCGTCCCCCGCCCGGCt                             >  2:2529845/1‑150 (MQ=37)
                                                                                                                          ctctTCGCGGGCAAA‑CCCGCTCCTACACAGGGCCGCGCCGCTTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTc                           <  2:791508/150‑1 (MQ=255)
                                                                                                                           ctctgcggggTAAACCCCGCCCCACCACCGGGCCGCGCGGCTTTGTGGGCGGGGTTTTCCCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTc                           <  1:638926/143‑1 (MQ=255)
                                                                                                                               cgcgGTTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGTTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGAt                      <  2:2614264/150‑1 (MQ=255)
                                                                                                                               cgcgGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCCCCGGCGTCCCCCGCCCGGCTTCCTGAt                      >  2:4560448/1‑150 (MQ=255)
                                                                                                                                gcgGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATg                     >  2:1414220/1‑150 (MQ=255)
                                                                                                                                gcgGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGGCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATg                     >  2:1414246/1‑150 (MQ=255)
                                                                                                                                gcgGGTAAA‑CCCGCTCCTACAACGCGGCGCGGCCCTGTGTAGGAGGGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCATCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATg                     <  2:3755192/150‑1 (MQ=25)
                                                                                                                                 ggggTAAA‑CCCGCTCCAACACTGGGCCGCGCCGCTTTGTCGGCGCGGTTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGc                    <  1:4105774/149‑1 (MQ=255)
                                                                                                                                 cgGGTAAA‑CCCGCTCCTACACAGGGCCGCGTCGCTTTGTAGGAGCGGGTTTACACGCGAAGAGGCCAGCACAGGCAATACAAAg                                                                                      >  1:1757712/1‑84 (MQ=21)
                                                                                                                                   ggTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCa                  >  1:37599/1‑150 (MQ=255)
                                                                                                                                    gTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCAc                 >  2:741003/1‑150 (MQ=255)
                                                                                                                                       aa‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGAt                      <  1:853343/142‑1 (MQ=255)
                                                                                                                                          cccGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAg            >  1:2854284/1‑150 (MQ=255)
                                                                                                                                          cccGCTCCTACACAGGGCCGCGCCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCCCTGCAg            >  2:2546008/1‑150 (MQ=255)
                                                                                                                                          cccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTTAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAg            >  2:3415616/1‑150 (MQ=25)
                                                                                                                                           ccGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACCAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg           >  2:2995035/1‑150 (MQ=255)
                                                                                                                                           ccGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg           >  1:3869856/1‑150 (MQ=255)
                                                                                                                                           ccGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg           >  2:2666738/1‑150 (MQ=255)
                                                                                                                                           ccGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg           >  2:2495104/1‑150 (MQ=255)
                                                                                                                                           ccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAggg                                                                              <  2:214150/83‑1 (MQ=11)
                                                                                                                                           ccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg           >  1:4271341/1‑150 (MQ=37)
                                                                                                                                            cGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCCGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGc                    >  2:2838889/1‑140 (MQ=21)
                                                                                                                                             gCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGc         >  1:2087407/1‑150 (MQ=255)
                                                                                                                                             gCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGc         >  2:3152199/1‑150 (MQ=37)
                                                                                                                                             gCTCCAACACCGGCCCGCGCCGCTTTGTCGGCGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGc         <  1:1125354/150‑1 (MQ=39)
                                                                                                                                               tCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCga       >  2:1341963/1‑150 (MQ=255)
                                                                                                                                               tCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCCCTGCAGGGCga       >  2:3657247/1‑150 (MQ=37)
                                                                                                                                                 cTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatc     >  1:2688927/1‑150 (MQ=255)
                                                                                                                                                 cTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCg                                           >  1:3602573/1‑112 (MQ=21)
                                                                                                                                                 cTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatc     >  1:2655138/1‑150 (MQ=37)
                                                                                                                                                  tACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCa             >  1:2795055/1‑141 (MQ=255)
                                                                                                                                                  tACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCa             <  2:2795055/141‑1 (MQ=255)
                                                                                                                                                  tACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca    >  2:4938698/1‑150 (MQ=255)
                                                                                                                                                  tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCCGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca    >  2:1558950/1‑150 (MQ=25)
                                                                                                                                                  tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCCGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca    >  1:185050/1‑150 (MQ=25)
                                                                                                                                                  tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCCGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca    >  1:977193/1‑150 (MQ=25)
                                                                                                                                                  tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCCGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca    >  2:482582/1‑150 (MQ=25)
                                                                                                                                                  tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCCGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca    >  2:4855406/1‑150 (MQ=25)
                                                                                                                                                  tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca    >  2:3108175/1‑150 (MQ=37)
                                                                                                                                                  tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca    >  1:3013748/1‑150 (MQ=37)
                                                                                                                                                  tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca    >  1:783491/1‑150 (MQ=37)
                                                                                                                                                  tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca    >  1:813558/1‑150 (MQ=37)
                                                                                                                                                  tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca    <  2:4271341/150‑1 (MQ=37)
                                                                                                                                                   ccactGGGCCGCGCCGCTTTGTCGGCGGGGTTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcag   <  1:4412298/149‑1 (MQ=255)
                                                                                                                                                    cacaGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcaga  >  1:777688/1‑149 (MQ=255)
                                                                                                                                                      |                                                                                                                                                   
CTGCATTTTGCCCTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAA‑CCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGG  >  NC_002947/1544382‑1544678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑