Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,544,5430GC43.0% 132.0 / 248.5 179intergenic (+60/+54)mdfA/ampGmultidrug MFS transporter/muropeptide permease AmpG
Reads supporting (aligned to +/- strand):  ref base G (42/60);  new base C (33/44);  total (75/104)
Fisher's exact test for biased strand distribution p-value = 8.79e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.03e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 194 total aligned reads displayed.

CTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCA  >  NC_002947/1544394‑1544691
                                                                                                                                                     |                                                                                                                                                     
cTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCCCGCCTACACACGgccgcgccg                                                                                                                                                       >  2:4105774/1‑150 (MQ=255)
   gcggggGGGGTGGGGGGGGCGTGGGCGCTGGGGCCGCTGTGGTTGGGGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCtt                                                                                                                                                    <  2:2294388/150‑1 (MQ=39)
    gggggggggTGGCGGGGGGGTGGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCttt                                                                                                                                                   <  1:2912752/146‑1 (MQ=255)
    gggggggggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCGGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCttt                                                                                                                                                   <  2:3398356/146‑1 (MQ=255)
    cggcggGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCttt                                                                                                                                                   <  2:1577851/150‑1 (MQ=255)
    cggcggGGGTGGCGGGGGCGTGGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGTGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCttt                                                                                                                                                   <  2:5034363/150‑1 (MQ=255)
       gggggggggggggggCGTGGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                                <  1:2468481/149‑1 (MQ=25)
       gggggggggCGGGGGCGTGGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                                <  2:3347472/149‑1 (MQ=37)
       ggggggTGGGGGGGGCGGTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGGGGGCGGCCTGGGGACGGGGCTGGAGCTCGATAATCGGTAGTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                                <  2:4030623/149‑1 (MQ=25)
       ggggggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                                <  1:4150563/149‑1 (MQ=37)
       ggggggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                                <  1:1312799/149‑1 (MQ=37)
       ggggggTGGCGGGGGCGTTGGCGCTGTGGCCGCCGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTa                                                                                                                                                <  2:3661867/149‑1 (MQ=255)
       cggGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                                <  2:4274294/150‑1 (MQ=37)
        ggggggggggggggCGTTGGCGGTGTGGCCGGGGTGTTTTGTGGGGGGGGGGCGGCCTGGGGCAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAg                                                                                                                                               <  1:2665266/150‑1 (MQ=38)
        ggggggggCGGGGGCGTTGGCGCTTGGGGCGCTGTGGTTTTGTGTGGGTGGGCGGCGTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAg                                                                                                                                               <  1:4186585/150‑1 (MQ=21)
        ggggggggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAg                                                                                                                                               <  1:2879134/150‑1 (MQ=255)
        ggggggggCGGGGGCGGGGGCGCTGTGGCCGCGGTGGTGGGGGGGGGGGGGGCGGCCTGGGGACGGGGCTGTAGCTCGATCATCGGTAGTGCCGGGGCCGGCCTCTTCGCGGGTAACCCCGCTCCTACACAGGGCCGCGCCGCTTTGTAg                                                                                                                                               <  2:3809894/150‑1 (MQ=255)
        gggggTGGGGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGACCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAg                                                                                                                                               <  1:3219734/150‑1 (MQ=255)
        gggggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCGTTGTAg                                                                                                                                               >  1:2572990/1‑150 (MQ=255)
        gggggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGGGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAg                                                                                                                                               <  2:901465/150‑1 (MQ=255)
          ggggggggggggggTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGa                                                                                                                                             <  1:3280353/150‑1 (MQ=25)
          ggggggggggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGa                                                                                                                                             <  1:469833/150‑1 (MQ=25)
          ggggggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGa                                                                                                                                             <  2:2449343/150‑1 (MQ=37)
          gggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGa                                                                                                                                             <  2:2063005/150‑1 (MQ=37)
             tGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCg                                                                                                                                          <  1:4297718/150‑1 (MQ=37)
              ggggggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                                         <  1:5004799/147‑1 (MQ=25)
              ggggggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                                         <  2:1806048/147‑1 (MQ=25)
              ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGTTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                                         <  2:1953014/150‑1 (MQ=25)
              ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                                         <  2:2574940/150‑1 (MQ=37)
              ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                                         <  1:521439/150‑1 (MQ=37)
              ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGGAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                                         <  2:3009696/150‑1 (MQ=25)
               ggggggggGTTGGCGCTGTGGCCGCTGTGGTTGGTGGTGGGTGGGCGGCCTGGGGACGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCggg                                                                                                                                        <  1:3000470/148‑1 (MQ=25)
               gCGGGGGCGTGGGCGCGGTGGCCGCGGTGGTTGGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCggg                                                                                                                                        <  2:214860/150‑1 (MQ=255)
                ggggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGt                                                                                                                                       <  1:3116549/149‑1 (MQ=25)
                ggggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGt                                                                                                                                       <  1:778687/149‑1 (MQ=25)
                 gggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTTAAACCCCGACTACACACGGCCCCGCCCCGTTGTAGGAGCGGGtt                                                                                                                                      >  2:3035337/1‑150 (MQ=255)
                  ggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGttt                                                                                                                                     <  1:4507881/150‑1 (MQ=255)
                  ggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGttt                                                                                                                                     >  2:3384285/1‑150 (MQ=255)
                             gcTGTGGCCGCTGGGGTTGGTGGGGGGGGGGCGGCCGGGGGAAGGGGCTGTAGCTCGATAAGCGGTATGGCGGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAaga                                                                                                                         <  2:3566722/150‑1 (MQ=37)
                             gcTGTGGCCGCTGGGGTTGGGGGGGGGTGGGCGGCCGGGGGACGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCGGCGCGGGTAACCCCGCTCCTCCACCGGGCCGCGCCGCTTGGTCGGAGCGGGTTTC‑CCCGCGAaga                                                                                                                         <  2:3267513/150‑1 (MQ=255)
                                   gCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAg                                                                                                                                               >  2:1107852/1‑123 (MQ=25)
                                   gCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAg                                                                                                                                               <  1:1107852/123‑1 (MQ=25)
                                          gggTTTGGGGGGGGGGGGCGCCGGGGGGATGGGGCTGGAGCTCGATAAGCGGTATTGCCGGGGCCGGCCCCTTCGCGGGTACCCCCGCTCCTACACCGGGCCGCGCCGCTTTGTAGGCGCGGTTTTA‑CCCGCGAAGAGGCCAGCACAGGc                                                                                                            <  2:2391553/149‑1 (MQ=25)
                                                  ggggggggggCGGCCGGGGGAGGGGGCTGGCGCTCGATACGCGGTTTGGCGGGGGCGGGCCTCTTCGCGGGTAAACCCGCTCCTCCACCGGGCCGCGCCGCTTGGTTGGCGGGGTTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACaaa                                                                                                    <  2:610288/147‑1 (MQ=21)
                                                      ggtgggGGGCGGGGGGAAGGGGCTGTAGCTCGATCCTCGGTATTGCCGGGGCCGGCCTCTGCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTCGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCtt                                                                                                <  2:4270036/150‑1 (MQ=25)
                                                       gtgggCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTc                                                                                               <  2:2888239/150‑1 (MQ=255)
                                                             ggcCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑c                                                                                                                                  >  1:26428/1‑109 (MQ=255)
                                                                          ggCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCggg                                                                                                                                        >  1:3360437/1‑91 (MQ=255)
                                                                                           cgttATTGCGGGGGCCGGCCTCTTCGGGGTTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGTGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCg                                                           <  2:3403844/147‑1 (MQ=38)
                                                                                                    ctgtgctggccTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCGGTGTAGGAGCGGGTTTA‑CCCCCGAAGAGGCCAGCACAGGCAATACAAATCTTCAGGGCCGCTCAGCCACCGAGAGGTCATCCCCCACCGGCGTccccc                                                  >  1:3755192/8‑150 (MQ=17)
                                                                                                         ccggccTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCcccgcccg                                             <  2:2093929/150‑1 (MQ=255)
                                                                                                           ggccTCTGGGGGGGAAACCCCGCCCCAACCCGGGGCGGCGCCGCTTGGTCGGCG‑GGGTTTACCCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGc                                           <  1:663634/150‑1 (MQ=255)
                                                                                                            gccTCTTCGCGGGTAAACCCGCTCCGACACAGGGCCGCGCCGCGTGGGAGGAGCGGGGTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCGTCAGGGCCGCTCAGCCCCCCAGTGGTCGGCCGCCACCGGCGTCCCCCGCCCGGCt                                          >  2:2529845/1‑150 (MQ=37)
                                                                                                              ctctTCGCGGGCAAACCCGCTCCTACACAGGGCCGCGCCGCTTGGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTc                                        <  2:791508/150‑1 (MQ=255)
                                                                                                                   cgcgGTTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGTTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGAt                                   <  2:2614264/150‑1 (MQ=255)
                                                                                                                    gcgGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATg                                  >  2:1414220/1‑150 (MQ=255)
                                                                                                                    gcgGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATg                                  >  2:3697265/1‑150 (MQ=255)
                                                                                                                    gcgGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGGCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATg                                  >  2:1414246/1‑150 (MQ=255)
                                                                                                                     cgGGTAAACCCGCTCCTACACCGGGCCGCGTCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAg                                                                                                   <  2:1757712/84‑1 (MQ=255)
                                                                                                                     cgGGTAAACCCGCTCCTACACAGGGCCGCGTCGCTTTGTAGGAGCGGGTTTA‑CACGCGAAGAGGCCAGCACAGGCAATACAAAg                                                                                                   >  1:1757712/1‑84 (MQ=21)
                                                                                                                        gTAACCCCGCTCCTACACTGGGCCGCGCCGCTTTGTTGGTGGGGTTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCAc                              <  1:287093/150‑1 (MQ=255)
                                                                                                                        gTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCAc                              >  2:741003/1‑150 (MQ=255)
                                                                                                                           aaCCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGAt                                   <  1:853343/142‑1 (MQ=255)
                                                                                                                             cccGCTCCTACATAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAg                         >  2:1856733/1‑150 (MQ=255)
                                                                                                                             cccGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAg                         >  1:2854284/1‑150 (MQ=255)
                                                                                                                             cccGCTCCTACACAGGGCCGCGCCGCGTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCCCTGCAg                         >  2:2546008/1‑150 (MQ=255)
                                                                                                                             cccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTTAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAg                         >  2:3415648/1‑150 (MQ=25)
                                                                                                                              ccGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg                        >  2:2495104/1‑150 (MQ=255)
                                                                                                                              ccGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg                        >  2:2666738/1‑150 (MQ=255)
                                                                                                                              ccGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg                        >  2:2995011/1‑150 (MQ=255)
                                                                                                                              ccGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg                        >  1:3869856/1‑150 (MQ=255)
                                                                                                                               cGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCGGCCCCGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGc                                 >  2:2838889/1‑140 (MQ=21)
                                                                                                                                gCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGc                      >  1:2087407/1‑150 (MQ=255)
                                                                                                                                gCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGc                      >  2:3152199/1‑150 (MQ=37)
                                                                                                                                gCTCCAACACCGGCCCGCGCCGCTTTGTCGGCGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGc                      <  1:1125354/150‑1 (MQ=39)
                                                                                                                                  tCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCga                    >  2:1341963/1‑150 (MQ=255)
                                                                                                                                  tCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCga                    >  1:3389257/1‑150 (MQ=37)
                                                                                                                                    cTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatc                  >  2:4424140/1‑150 (MQ=255)
                                                                                                                                    cTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCg                                                        <  2:3602573/112‑1 (MQ=21)
                                                                                                                                     tACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCa                          <  2:2794978/141‑1 (MQ=255)
                                                                                                                                     tACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCa                          >  1:2794978/1‑141 (MQ=255)
                                                                                                                                     tACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCa                          <  2:2795055/141‑1 (MQ=255)
                                                                                                                                     tACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca                 >  2:4938698/1‑150 (MQ=255)
                                                                                                                                     tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCGGCCCCGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca                 >  2:1558950/1‑150 (MQ=25)
                                                                                                                                     tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCGGCCCCGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca                 >  2:4855389/1‑150 (MQ=25)
                                                                                                                                     tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCGGCCCCGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca                 >  1:185050/1‑150 (MQ=25)
                                                                                                                                     tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca                 >  1:813558/1‑150 (MQ=37)
                                                                                                                                     tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca                 >  2:3108175/1‑150 (MQ=37)
                                                                                                                                      ccactGGGCCGCGCCGCTTTGTCGGCGGGGTTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcag                <  1:4412298/149‑1 (MQ=255)
                                                                                                                                        aaagcggcgcggcccTGTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcagga              >  2:466357/8‑150 (MQ=38)
                                                                                                                                          agcggcgcggcccTGTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcaggatc            >  1:948249/6‑150 (MQ=255)
                                                                                                                                          agcggcgcggcccTGTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcaggatc            >  1:2636590/6‑150 (MQ=255)
                                                                                                                                          aGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcaggatc            >  1:3014894/1‑150 (MQ=255)
                                                                                                                                          aGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcaggatc            >  1:4755964/1‑150 (MQ=255)
                                                                                                                                          aGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcaggatc            >  1:3840969/1‑150 (MQ=255)
                                                                                                                                          aGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcaggatc            >  1:4069927/1‑150 (MQ=255)
                                                                                                                                               cgcgccgcTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGt                                                                          >  2:4164034/1‑83 (MQ=255)
                                                                                                                                               cgcgccgcTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGt       >  1:2807945/1‑150 (MQ=255)
                                                                                                                                                gcgccgcTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTa      <  1:1550849/150‑1 (MQ=255)
                                                                                                                                                  gccgcTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAgg    >  1:218851/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
CTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGGTTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCA  >  NC_002947/1544394‑1544691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑