Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,376,485:1 | +T | 9.3% | intergenic (+17/‑131) | PP_2975 → / → PP_2976 | insertion element ISR1 protein A3/transposase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,376,485 | 1 | . | T | 9.3% | 155.3 / 11.5 | 43 | intergenic (+17/‑131) | PP_2975/PP_2976 | insertion element ISR1 protein A3/transposase |
Reads supporting (aligned to +/- strand): ref base . (18/21); new base T (2/2); total (20/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.37e-01 |
CGGCGGCATGGATGCATCATTGATGACCAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTGAGAGAATGGAGCCCATATGAGCAAGCACACCAA > NC_002947/3376336‑3376632 | cggcggCATGGATGCATCATTGATGACCAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGgcgc < 1:468155/150‑1 (MQ=255) gcggcATGGATGCATCATTGATGACCAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑ga < 1:1079104/150‑1 (MQ=255) cATGGATGCATCATTGATGACCAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATg < 2:1043827/150‑1 (MQ=255) aTGGATGCATCATTGATGACCAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATgg < 1:1017849/150‑1 (MQ=255) atgaCCAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGgttc < 1:360757/150‑1 (MQ=255) atgaCCAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGgttc < 1:34294/150‑1 (MQ=255) ccAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATg < 1:8511/130‑1 (MQ=255) ccAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATg > 2:8511/1‑130 (MQ=255) cAGGCTTCGTGAACTGGAAGAGAAGACCCGTCGGCTCGCGAGCGTGTTGGCTTAGTAGCGCCTCAATTCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCa < 2:1030602/150‑1 (MQ=255) cAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATTTCTCAGCAGGCGGTTCGTTCa < 2:98835/150‑1 (MQ=255) gAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCGAGTATCa > 1:1006944/1‑150 (MQ=255) gaggagAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAAt > 1:928495/1‑150 (MQ=255) aggagAACCGTCGGCTCAAGAAGATGTACGCCGAGGGGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAAtt > 2:781927/1‑150 (MQ=255) gagaACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGc < 1:1011527/136‑1 (MQ=255) gagaACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGc > 2:1011527/1‑136 (MQ=255) gagaACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAg > 1:814532/1‑150 (MQ=255) agaACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGc < 2:123265/150‑1 (MQ=255) aaCCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGt > 1:355489/1‑150 (MQ=255) ccGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGc < 1:61784/150‑1 (MQ=255) cGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGt < 2:814532/150‑1 (MQ=255) ggCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTC‑GCGCCGCTGAGATGgc < 2:1008297/99‑1 (MQ=255) ggCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTC‑GCGCCGCTGAGATGgc > 1:1008297/1‑99 (MQ=255) gaagaTGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGt > 1:146715/1‑150 (MQ=255) cGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACg > 2:99365/1‑150 (MQ=255) cGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACg > 1:1071552/1‑150 (MQ=255) gCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGgttcgtt > 1:811271/1‑99 (MQ=255) gCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGgttcgtt < 2:811271/99‑1 (MQ=255) cGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACt < 2:147248/150‑1 (MQ=255) tCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAgg > 1:841057/1‑77 (MQ=255) tCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAgg < 2:841057/77‑1 (MQ=255) cAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCgg < 2:239850/150‑1 (MQ=255) aGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGt < 2:928495/150‑1 (MQ=255) aGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCGCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGt > 2:214719/1‑150 (MQ=255) ggCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGtt > 2:656677/1‑150 (MQ=255) atcCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGc < 2:684152/150‑1 (MQ=255) atcCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGc > 1:614623/1‑150 (MQ=255) cAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTcc > 2:392503/1‑150 (MQ=255) gCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAAAATGACGGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCtt > 1:57516/1‑150 (MQ=255) ccATGGCAAAAAAGTGGTCCAGCCTTCTCGGCGCTGC‑GATATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCttt < 2:10545/150‑1 (MQ=255) ccATCGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGCGTTTCGCGGAGGCTCCACCCttt < 2:552216/150‑1 (MQ=255) aGTGGTAAAGACATCTCAGCGGAGC‑GAGAAGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCACCGGGTTTCGCGGAGGCTCCACCCTTTGAGAGAATGGAg < 2:57516/150‑1 (MQ=255) tGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTGAGAGAATGGAGcc > 1:1038776/1‑150 (MQ=255) cgCCATCTC‑GCGCCGCTGAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCa > 1:255366/2‑87 (MQ=38) cgCCATCTC‑GCGCCGCTGAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCa < 2:255366/86‑1 (MQ=38) cATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTGAGAGAATGGAGCCCATATGagc < 1:408516/150‑1 (MQ=255) cgc‑gAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTGAGAGAATGGAGCCCATATGAGCAAGCACACCaa > 1:730035/1‑150 (MQ=255) | CGGCGGCATGGATGCATCATTGATGACCAGGCTGCGTGAACTGGAAGAGGAGAACCGTCGGCTCAAGAAGATGTACGCCGAGGAGCGCCTCAAGGCCGAGATCATCCAGGAGGCCATGGCAAAAAAGTGGTAAAGCCATCTCAGCGGCGC‑GAGATGGCGCAGCAGGCGGTTCGTTCAGGCAAAGCCAGTATCAAATTAGCGTGCCTGTCGTTTGGTATCAGCACGACTGAACCGCCCCGGGTTTCGCGGAGGCTCCACCCTTTGAGAGAATGGAGCCCATATGAGCAAGCACACCAA > NC_002947/3376336‑3376632 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |