New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 401316	NA (NA)	3 (0.080)	3/228	NT	8.7%	coding (899/1059 nt)	PP_0334	transposase
	?	NC_002947	= 401372	35 (0.810)					coding (955/1059 nt)	PP_0334	transposase

GGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGAtgatcgccgcctc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/401171‑401316 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCAGGCTGCGTATGTAGCCGTCACCGCGCTTGCTCATCTTGCCCAAT  <  NC_002947/401372‑401212                                                                                                                                                                                                                                                                                                                     GGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGAT                                                                                                                                                               <  2:18476/150‑1     TCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCC                                                                                                                                                           <  1:117854/150‑1     TCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCC                                                                                                                                                           >  2:227418/1‑150     TCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCC                                                                                                                                                           >  1:513081/1‑150       GTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGC                                                                                                                                                         <  1:387532/150‑1        TGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCC                                                                                                                                                        >  1:607527/1‑150         GCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGCTCAGCCAGATGATCGCCGCCT                                                                                                                                                       >  1:158594/1‑150         GCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCT                                                                                                                                                       >  2:1093304/1‑150          CCCGATCAGCACAGCAGCGGAAACAAAATCATATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTC                                                                                                                                                      <  2:528674/150‑1                                                                  TGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATACCGATCAGCCAGATGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGG                                                                                              <  2:607527/150‑1                                                                                               AGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGC                                                                                                     >  1:732318/1‑114                                                                                               AGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGC                                                                                                     <  2:732318/114‑1                                                                                                                                                    GATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCA                                              <  1:298708/116‑1                                                                                                                                                    GATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCA                                              >  2:298708/1‑116                                                                                                                                                     ATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCAGGCTGCGTATGTAGCCGTCACCGCGCTTGCTCATC           >  2:662580/1‑150                                                                                                                                                     ATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCAGGCTGCGTATGTAGCCGTCACCGCGCTTGCTCATC           <  1:662580/150‑1                                                                                                                                                      TCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATC                                                                                                            >  2:753891/1‑52                                                                                                                                                      TCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATC                                                                                                            <  1:753891/52‑1                                                                                                                                                        GCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCAGGCTGCGTATGTAGCCGTCACCGCGCTTGCTCATCTTG        <  2:994106/150‑1                                                                                                                                                         CCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCAGGCTGCGTATGTAGCCGTCACCGCGCTTGCTCATCTTGC       <  1:361288/150‑1                                                                                                                                                          CGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCAGGCTGCGTATGTAGCCGTCACCGCGCTTGCTCATCTTGCC      <  1:963109/150‑1                                                                                                                                                          CGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCAGGCTGCGTATGTAGCCGTCACCGCGCTTGCTCATCTTGCC      <  1:963091/150‑1                                                                                                                                                           GCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCAGGCTGCGTATGTAGCCGTCACCGCGCTTGCTCATCTTGCCC     >  1:1004768/1‑150                                                                                                                                                            CCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCAGGCTGC‑‑ATGTAGCCGTCACCGCGCTTGCTCATCTTGCCCAAT  >  2:494580/1‑150                                                                                                                                                            CCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGC                                                              >  2:1112230/1‑92                                                                                                                                                            CCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGC                                                              <  1:1112230/92‑1                                                                                                                                                             CTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCAGGCTGCGTATGTAGCCGTCACCGCGCTTGCTCATCTTGCCCAA   <  2:339565/150‑1                                                                                                                                                             CTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCAGGCTGCGTATGTAGCCGTCACCGCGCTTGCTCATCTTGCCCAA   >  1:836333/1‑150                                                                                                                                                                                                                                                                                                                     GGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGAtgatcgccgcctc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/401171‑401316 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCAGGCTGCGTATGTAGCCGTCACCGCGCTTGCTCATCTTGCCCAAT  <  NC_002947/401372‑401212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.