| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1246689 | 45 (1.040) | 4 (0.110) | 4/214 | NT | 8.5% | intergenic (+84/‑287) | PP_1087/argG | OmpA family outer membrane protein/argininosuccinate synthase |
| ? | NC_002947 | = 1246715 | 48 (1.320) | intergenic (+110/‑261) | PP_1087/argG | OmpA family outer membrane protein/argininosuccinate synthase | |||||
TGGAAAAGCCGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1246532‑1246689‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcctgtgagatcgagcgcCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATCTCACAGGCGCTGAAAATGTTGTGACGAACCCCTGGCGGCCTTGATGCGAGCCCATGACATGCACCGACCAGATCTCAGGGCGCCTTCGCCCCCGGGACGCCCGAGGC < NC_002947/1246715‑1246573 taGAAAAGCAGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAATGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGA < 1:60451/148‑1 GGAAAAGCCGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGGCACAACATTTTCAGCGCCTGTGAGAT > 1:548857/1‑150 GAAAAGCCGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATC < 1:960366/150‑1 GAAAAGCCGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCACCATGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATC > 1:789689/1‑150 GCCGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCCAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGGTCGAGCG > 1:296601/1‑150 GCCGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCG > 1:226538/1‑150 CGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATC < 1:281454/140‑1 CGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATC > 2:281454/1‑140 ATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGAT > 1:1070153/1‑90 ATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGAT < 2:1070153/90‑1 CGCCTGTGAGATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATCTCACAGGCGCTGAAACTGTTGTGTCGAACCCCTGGCGGCCTTGATGCGAGCCCATGACATGCACCGACCAGATCTCAGGGCGCCTTCGCCCCCGG < 1:74552/150‑1 aCTGTGAGATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATCTCACAGGCGCTGAAAATGTTGTGACGAACACCTGGCGGCCTTGATGCGAGCCCATGACATGCACCGACCAGATCTCGGGGCGCCTTCGCCCCCGGGA > 1:388340/2‑150 CTGTGAGATCGAGCGCCTCAGATGTCCGCCTCGAAACATTCTGCGCTCGATCTCACAGGCACTCAAAATGTTGTAACGAACCCCTGGCGGCCTTGATGCGAGCCCATGACATCAACCGACCAGATCTCAGGGCCCCTTGCCCCCCGGGAC > 2:548857/1‑150 GTGAGATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATCTCACAGGCGCTGAAAATGTTGTGACGAACCCCTGGCGGCCTTGATGCGAGCCCATGACATGCACCGACCAGATCTCAGGGCGCCTTCGCCCCCGGGACGC < 2:1011120/150‑1 GTGAGATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATCTCACAGGCGCTGAAAATGTAGTGACGAACCCCTGGCGGCCTTGATGCGAGCCCATGACATCCGTCCTGCAGATCTCAGGGCGCCTTCGCCCCCGGGACGC < 1:933327/150‑1 TGAGATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATCTCACAGGCGCTGAAAATGTTGTGACGAACCCCTGGCGGCCTTGATGCGAGCCCATGACATGCACCGACCAGATCTCAGGGCGCCTTCGCCCCCGGGACGCC > 1:874442/1‑150 TGAGATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATCTCACAGGCGCTGAAAATGTTGTGACGAACCCCTGGCGGCCTTGATGCGAGCCCATGACATGCACCGACCAGATCTCAGGGCGCCTTCGCCCCCGGGAC < 2:294966/147‑1 TGAGATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATCTCACAGGCGCTGAAAATGTTGTGACGAACCCCTGGCGGCCTTGATGCGAGCCCATGACATGCACCGACCAGATCTCAGGGCGCCTTCGCCCCCGGGAC > 1:294966/1‑147 GATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATCTCACAGGCGCTGAAAATGTTGTGACGAACCCCTGGCGGCCTTGATGCGAGCCCATGACATGCACCGACCAGATCTCAGGGCGCCTTCGCCCCCGGGACGCCCGA > 2:876885/1‑150 ATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATCTCACAGGCGCTGAAAATGTTGTGACGAACCCCTGGCGGCCTTGATGCGAGCCCATGACATGCACCGACCAGATCTCAGGGCGCCTTCGCCCCCGGGACGCCCGAG > 1:1053507/1‑150 ATCGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATCTCACAGGCGCTGAAAATGTTGTGACGAACCCCTGGCGGCCTTGATGCGAGCCCATGACATGCACCGACCAGATCTCAGGGCGCCTTCGCCCCCGGGACGCCCGAG < 2:874442/150‑1 CGAGCGCCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATCTCACAGGCGCTGAAAATGTTGTGACGAACCCCTGGCGGCCTTGATGCGAGCCCATGACATGCACCGACCAGATCTCAGGGCGCCTTCGCCCCCGGGACGCCCGAGGC < 2:558316/150‑1 TGGAAAAGCCGGTTGAGCAAGCGGCGCCGGGTGTTGCACCTGCCTCGGGCGTCCCGGGGGCGAAGGCGCCCTGAGATCTGGTCGGTGCATGTCATGGGCTCGCATCAAGGCCGCCAGGGGTTCGTCACAACATTTTCAGCGCCTGTGAGATCGAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1246532‑1246689‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcctgtgagatcgagcgcCTCAGGTGTCCGCCTCGAAACATTCTGCGCTCGATCTCACAGGCGCTGAAAATGTTGTGACGAACCCCTGGCGGCCTTGATGCGAGCCCATGACATGCACCGACCAGATCTCAGGGCGCCTTCGCCCCCGGGACGCCCGAGGC < NC_002947/1246715‑1246573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |