New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1690686 | 39 (0.900) | 3 (0.070) | 3/238 | NT | 7.5% | coding (187/1146 nt) | ydcS | polyamine ABC transporter, periplasmic polyamine‑binding protein |
? | NC_002947 | = 1690692 | 38 (0.940) | coding (181/1146 nt) | ydcS | polyamine ABC transporter, periplasmic polyamine‑binding protein |
CAGGGCAGTGTTGATCGGCTGTACGCGCTTGCCTGCAATCAGCCGCAGCGATGCATCGCCCGAGGCGGTGACCAGGTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCGGCCGTTTTCACGCTGACCTTGCAGCCGGTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1690531‑1690686 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtttcGAAAAGGAAACCGGCTGCAAGGTCAGCGTGAAAACGGCCGCCACCTCGGACGAGATGGTCAGCCTGATGACCAAGGGCGGCTATGACCTGGTCACCGCCTCGGGCGATGCATCGCTGCGGCTGATTGCAGGCAAGCGCGTAC < NC_002947/1690692‑1690551 CAGGGAAGTGTTGATCGGCTGTGCGCTCTTGTTTGCAATCAGCCGCAGCGATGCATCGCCCGAGGCGGTGACCAGGTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCGGCCGTTTTCACGCTGACCTTGCAGCC < 2:342249/150‑1 CCGTTTTCACGCTGACCTTGCAGCCGGTTTCGAAAAGGAAACCGGC > 1:736501/1‑46 CCGTTTTCACGCTGACCTTGCAGCCGGTTTCGAAAAGGAAACCGGC < 2:736501/46‑1 TCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGCTGCAAGGTCAGCGTGAAAACGGCCGCCACCTCGGACGAGATGGTCAGCCTGATGACCAAGGGCGGCTATGACCTGGTCACCGCCTCGGGCGATGCATCGCTGCGGCTGAT > 1:649160/1‑150 CCGGTTTCGAAAAGGAAACCGGCTGCAAGGTCAGCGTGAAAACGGCCGCCACCTCGGACGAGATGGTCAGCCTGATGACCAAGGGCGGCTATGACCTGGTCACCGCCTAGCGGGATGCATCGCTGCGGCTGATTGCAGGCAAGCGCGTAC > 1:850977/1‑150 CAGGGCAGTGTTGATCGGCTGTACGCGCTTGCCTGCAATCAGCCGCAGCGATGCATCGCCCGAGGCGGTGACCAGGTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCGGCCGTTTTCACGCTGACCTTGCAGCCGGTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1690531‑1690686 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtttcGAAAAGGAAACCGGCTGCAAGGTCAGCGTGAAAACGGCCGCCACCTCGGACGAGATGGTCAGCCTGATGACCAAGGGCGGCTATGACCTGGTCACCGCCTCGGGCGATGCATCGCTGCGGCTGATTGCAGGCAAGCGCGTAC < NC_002947/1690692‑1690551 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |