New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2131135 =	45 (1.040)	4 (0.100)	4/242	NT	8.3%	coding (1107/2496 nt)	fimD	type I pili subunit FimD
	?	NC_002947	2131175 =	45 (1.090)					coding (1067/2496 nt)	fimD	type I pili subunit FimD

CGCCATCGACGACCTGAGTACCGCAGGCAGCGGCGAGCTGGAAGTCGTCGTGACCGAGGCCGATGGCCAGGTCCGCCGCTTCATCCAGCCGTACTCGACCATGAGCAATCTGCTGCGCCCAGGCGTATGGCGTTACAGTGCCACGGTCGGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2131288‑2131135 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgcAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGACTTCCAGCTCGCCGCTGCCTGCGGTACTCAGGTCGTCGATGGCGTAGGGGCCGGCGCTGACGTACGTCGAGTAGA  >  NC_002947/2131175‑2131319                                                                                                                                                                                                                                                                                                             CGCCATCGACGACCTGAGTACCGCAGGCAGCGGCGAGCTGGAAGTCGTCGTGACCGAGGCCGATGGCCAGGTACGACCCTTCATCCAGCGGAACTCGACCATGAGCAATCTGCTGCGCCCAGGCGTATGGCGTTACAGTGCCACGGTCGG                                                                                                                                                       <  1:689670/150‑1    CATCGACGACCTGAGTACCGCAGGCAGCGGCGAGCTGGAAGTCGTCGTGACCGAGGCCGATGGCCAGGTCCGCCGCTTCATCCAGCCGTACTCGACCATGAGCAATCTGCTGCGCCCAGGCGTATGGCGTTACAGTGCCACGGTCGGGCG                                                                                                                                                    >  1:1125326/1‑150     ATCGACGACCTGAGTACCGCAGGCAGCGGCGAGCTGGAAGTCGTCGTGACCGAGGCCGATGGCCAGGTCCGCCGCTTCATCCAGCCGTACTCGACCATGAGCAATCTGCTGCGCCCAGGCGTATGGCGTTACAGTGCCACGGTCGGGCGC                                                                                                                                                   <  2:1125326/150‑1                                                                                                   CCATGAGCAATCTGCTGCGCCCAGGCGTATGGCGTTACAGTGCCACGGTCGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGA                                                                                <  1:1049443/123‑1                                                                                                   CCATGAGCAATCTGCTGCGCCCAGGCGTATGGCGTTACAGTGCCACGGTCGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGA                                                                                >  2:1049443/1‑123                                                                                                                     GCCCAGGCGTATGGCGTTACAGTGCCACGGTCGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGAC                                                                            <  1:230968/109‑1                                                                                                                     GCCCAGGCGTATGGCGTTACAGTGCCACGGTCGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGAC                                                                            >  2:230968/1‑109                                                                                                                                                      GGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGACTTCCAGCTCGCCGCTGCCTGCGGTACTCAGGTAGTCGATGGCGTAGGGGCCGGCGCGGACGTACGTAGAGAAGA  >  2:456013/1‑150                                                                                                                                                                                                                                                                                                             CGCCATCGACGACCTGAGTACCGCAGGCAGCGGCGAGCTGGAAGTCGTCGTGACCGAGGCCGATGGCCAGGTCCGCCGCTTCATCCAGCCGTACTCGACCATGAGCAATCTGCTGCGCCCAGGCGTATGGCGTTACAGTGCCACGGTCGGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2131288‑2131135 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgcAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGACTTCCAGCTCGCCGCTGCCTGCGGTACTCAGGTCGTCGATGGCGTAGGGGCCGGCGCTGACGTACGTCGAGTAGA  >  NC_002947/2131175‑2131319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.