New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3516639 =	38 (0.880)	3 (0.070)	6/244	NT	7.3%	intergenic (+636/‑499)	PP_5576/PP_5578	hypothetical protein/hypothetical protein
	?	NC_002947	3516657 =	40 (0.960)					intergenic (+654/‑481)	PP_5576/PP_5578	hypothetical protein/hypothetical protein

TAGCGGTAGTACGTGCTCTTGCCCGAGCAGTCCTGATAGCGTTCGACCTGGGCCAGGGTGTTCCACCACAGGTACTTGGACTTGTAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTCATCGCTGTTCAGGTACTCGGTCATCTGGCCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3516790‑3516639 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgagTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTGCTCGGGCAAGAGCACGTACTACCGCTATGACGAGCGCCA  >  NC_002947/3516657‑3516802                                                                                                                                                                                                                                                                                                            TAGCGGTAGTACGTGCTCTTGCCCGAGCAGTCCTGATAGCGTTCGACCTGGGCCAGGGTGTTCCACCACAGGTACTTGGACTTGTAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTCATCGCTGTTCAGGTACTCGGTCATCTGGCCG                                                                                                                                                      <  1:661719/150‑1                                          TTCGACCTGGGCCAGGGTGTTCCACCACAGGTACTTGGACTTGTAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTCATCGCTGTTCAGGTACTCGGCCAGATGACCGAGTAC                                                                                                                                                 <  1:865137/114‑1                                          TTCGACCTGGGCCAGGGTGTTCCACCACAGGTACTTGGACTTGTAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTCATCGCTGTTCAGGTACTCGGCCAGATGACCGAGTAC                                                                                                                                                 >  2:865137/1‑114                                                                                     TAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTCATCGCTGTTCAGGTACTCGGCCAGATGACCGAGTACCTGAACAGCGA                                                                                                                                      <  1:902940/82‑1                                                                                     TAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTCATCGCTGTTCAGGTACTCGGCCAGATGACCGAGTACCTGAACAGCGA                                                                                                                                      >  2:902940/1‑82                                                                                              TCGATGATGGTGTGCGGCAGGCCGTCATCGCTGTTCAGGTACTCGGCCAGATGACCGAGTAC                                                                                                                                                 <  1:704525/62‑1                                                                                              TCGATGATGGTGTGCGGCAGGCCGTCATCGCTGTTCAGGTACTCGGCCAGATGACCGAGTAC                                                                                                                                                 >  2:704525/1‑62                                                                                                                                       CTCGGTCATCTGGCCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTGCTCGGGCAAGAGCACGTACTACCGC                >  2:409339/1‑150                                                                                                                                                     CGAGTATCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTGCTCGGGCAAGAGCACGTACTACCGCTATGACGAGCGCCA  >  2:910300/1‑150                                                                                                                                                                                                                                                                                                            TAGCGGTAGTACGTGCTCTTGCCCGAGCAGTCCTGATAGCGTTCGACCTGGGCCAGGGTGTTCCACCACAGGTACTTGGACTTGTAGGTCGCATCGATGATGGTGTGCGGCAGGCCGTCATCGCTGTTCAGGTACTCGGTCATCTGGCCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3516790‑3516639 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgagTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTGCTCGGGCAAGAGCACGTACTACCGCTATGACGAGCGCCA  >  NC_002947/3516657‑3516802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.