New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3947984 | 18 (0.420) | 3 (0.090) | 3/198 | NT | 14.3% | coding (109/1797 nt) | PP_3483 | type II secretion system protein |
? | NC_002947 | = 3948013 | 22 (0.650) | coding (80/1797 nt) | PP_3483 | type II secretion system protein |
CAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3947820‑3947984 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcgcgggcatgcccgctcccacaggATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGAACCCAGCAAAAATTTCCGCCTACCCCCGCGACCTCCTGGCCCAGGCCCGTCTGCAAGCCACTGACGAGCGCCTGCTCGACTGCCTGGAACG < NC_002947/3948013‑3947866 CAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCAT < 1:874165/150‑1 CAGNCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGGCATTTTTGCTGGGTTCTTCGCGGGCATGCCCGC > 2:703600/1‑150 GCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCA < 1:968809/150‑1 GCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCA < 2:750230/150‑1 GGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCG < 2:973156/124‑1 GGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCG > 1:973156/1‑124 GTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGGCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGG < 2:1028828/150‑1 GGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGG < 1:713303/112‑1 GGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGG > 2:713303/1‑112 GCGGGCATGCCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGAACCCAGCAAAAATTTCCGCCTACCCCCGCGACCTCCTGGCCCAGGCCCGTCTGCAAGCCACTGACGAGCG > 1:720339/1‑150 CCCGCTCCCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGAACCCAGCAAAAATTTCCGCCTACCCCCGCGACCTCCTGGCCCAGGCCCGTCTGCAAGCCACTGACGAGCGCCTGCTCGA > 2:286782/1‑150 CCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGAACCCAGCAAAAATTTCCGCCTACCCCCGCGACCTCCTGGCCCAGGCCCGTCTGCAAGCCACTGACGAGCGCCTGCTCGACTGCCTG < 1:286782/150‑1 CCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAA > 1:976537/1‑62 CCACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAA < 2:976537/62‑1 ACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGC < 2:468988/53‑1 ACAGGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGC > 1:468988/1‑53 GGATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCACGCGAACAACCCAGCAAAAATTTCCGCCTACCCCCGCGACCTCCTGGCCCAGGCCCGTCTGCAAGCCACTGACGAGCGCCTGCTCGACTGCCTGGAACG > 1:690490/1‑150 CAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3947820‑3947984 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcgcgggcatgcccgctcccacaggATGTATGCAGCCCACAGACCTGTGATGTACCTGTGGGAGCGGGCATGCCCGCGAAGAACCCAGCAAAAATTTCCGCCTACCCCCGCGACCTCCTGGCCCAGGCCCGTCTGCAAGCCACTGACGAGCGCCTGCTCGACTGCCTGGAACG < NC_002947/3948013‑3947866 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |