New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4074198 =	NA (NA)	6 (0.140)	4/244	NT	NA	coding (1261/1329 nt)	PP_3586	transposase
	?	NC_002947	5223068 =	NA (NA)					coding (1277/1329 nt)	PP_4603	transposase

ATTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4074351‑4074198 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagccCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCT  >  NC_002947/5223068‑5223216                                                                                                                                                                                                                                                                                                                      ATTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑A                                                                                                                                                           >  2:12673/1‑150  TTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AA                                                                                                                                                          <  2:719100/150‑1  TTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AA                                                                                                                                                          <  1:957619/150‑1                        ACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTTTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCCCGGACCTGCCGGTCTTGGC                                                                                                                                    <  1:12673/150‑1                            ACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGGACCTGCCGGTCTTGG                                                                                                                                     <  1:795293/150‑1                             CTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAGAAGCAAAGCCCGGACCTGCCGGTCTTGGC                                                                                                                                    <  2:472747/150‑1                              TCGACTGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAG                                                                                                                                                         >  1:1081118/1‑123                              TCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAG                                                                                                                                                         <  2:1081118/123‑1                                                                                               TGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCC                                                                                                                                                       <  1:261435/60‑1                                                                                               TGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCC                                                                                                                                                       >  2:261435/1‑60                                                                                                      CAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCCCGGACCTGCCGGTCTTGGCTTCTGG                                                                                                                              <  1:880505/78‑1                                                                                                      CAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCCCGGACCTGCCGGTCTTGGCTTCTGG                                                                                                                              >  2:880505/1‑78                                                                                                                                        tgGTTCGAAACCAG‑‑‑‑‑AAGCCAAGACCGGCAGGTCCGGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCTGGT                    >  2:742424/3‑150                                                                                                                                                           AAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCTGGTATCCATTCGAGTCA      >  2:540658/1‑150                                                                                                                                                           AAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGG                              <  1:412966/126‑1                                                                                                                                                           AAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGG                              >  2:412966/1‑126                                                                                                                                                               CCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCT  >  1:245624/1‑150                                                                                                                                                               CCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCT  >  1:13383/1‑150                                                                                                                                                                                                                                                                                                                      ATTGGCGCATCGCACCGAGCCAGACTGACTCGAATGGATACCAGCTGCGCCATCAAAGCCACTGCGCATCAGTTGGCACGTCTGGTGTACAACCTGTTAACCAAGAAGCAGGCTTATGTTGAACAAGGTCTTGAGGAGTTCGAAGCCAG‑‑‑‑‑AAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4074351‑4074198 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagccCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCT  >  NC_002947/5223068‑5223216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.