| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4266591 | 54 (1.250) | 6 (0.160) | 6/220 | NT | 10.7% | intergenic (‑89/+57) | PP_3738/galP‑IV | transcriptional regulator VanR/porin‑like protein |
| ? | NC_002947 | = 4266628 | 53 (1.410) | intergenic (‑126/+20) | PP_3738/galP‑IV | transcriptional regulator VanR/porin‑like protein | |||||
GCTCGCCGGCCGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4266427‑4266591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggttcacccgcgaaCACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAACAGGCCTGCAGCAACCCCTCGGCTTGCGCTAAGATGCCCGCTCATGTCTTTGGAAGTCGCCTGGATGAGCAAACCCGGTCA < NC_002947/4266628‑4266486 GCTCGCCGGCCGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGC < 1:958393/150‑1 TCGCCGGCCGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGG > 1:1036041/1‑150 CGCCGGCCGCCAACTCGCCTGAAGCGATCATCTTTCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGG < 1:622796/150‑1 CGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCC > 1:813034/1‑150 CCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGCGCGGGCCTCTTAGCGCAAGCCGCGGGGCTGCTGCAGGCCTGTTGTAGGAGCGGGTTCCCCCGC > 2:416288/1‑150 CCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGC < 1:600721/150‑1 TCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAACATCGGCGCAGCCGGTGC > 1:716032/1‑150 TCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGC < 2:914442/150‑1 TCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCAC < 1:260582/101‑1 TCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCAC > 2:260582/1‑101 CTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTCCACCCGCGAACATCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCG < 2:716032/150‑1 TGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAACACCGGCGCAGACGGCACCATGTTCCGCGTTGCCTGCTTCGCGG < 1:578305/150‑1 TCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACC > 2:8712/1‑144 TCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACC < 1:8712/144‑1 GGTTCACCCGCGAACACCGGCGCAGCCGTTGTGATGTTCCGCGTTGCCTGCTTCGCGGGTGAACACGCTCCTACAACAGGCCTGCAGCAACCCCTCGGCTTGCGCTAAGATGCCCGCTCATGTCTTTGGAAGTCGCCTGGATGAGCAAAC > 1:759599/1‑150 GTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAACAGGCCTGCAGCAACCCCTCGGCTTGCGCTAAGATGCCCGCTCATGTCTTTGGAAGTCGCCTGGATGAGCAAACC > 2:961792/1‑150 CACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAACAGGCCTGAAGCAACCCCTCGGCTTGGCCTTATTGCCCCTCTCAGGTCTTTGGAAGTCGCCTGGATGAGCAAACCCGG < 1:1041621/150‑1 CCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAACAGGCCTGCAGCAACCCCTCGGCTTGCGCTAAGATGCCCGCTCATGTCTTTGGAAGTCGCCTGGATGAGCAAACCCGGTCA > 1:602438/1‑150 CCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGC < 2:797688/61‑1 CCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGC > 1:797688/1‑61 GCTCGCCGGCCGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4266427‑4266591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggttcacccgcgaaCACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAACAGGCCTGCAGCAACCCCTCGGCTTGCGCTAAGATGCCCGCTCATGTCTTTGGAAGTCGCCTGGATGAGCAAACCCGGTCA < NC_002947/4266628‑4266486 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |