New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5190385 =	27 (0.620)	5 (0.130)	5/234	NT	17.0%	intergenic (‑72/+102)	PP_4570/cysK	hypothetical protein/cysteine synthase A
	?	NC_002947	5190422 =	24 (0.600)					intergenic (‑109/+65)	PP_4570/cysK	hypothetical protein/cysteine synthase A

AATGCGATCCCGCCCGGGTTGTTTTTACCGCGGCGGGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5190425‑5190385 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgggatcgCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGG  >  NC_002947/5190422‑5190565                                                                                                                                                                                           AATGCGATCCCGCCCGGGTTGTTTTTACCGCGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCA                                     >  2:952282/1‑150      GATCCCGCCCGGGTTGTTTTTACCGCGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTG                                                                        <  1:213233/110‑1      GATCCCGCCCGGGTTGTTTTTACCGCGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTG                                                                        >  2:213233/1‑110       ATCCCGCCCGGGTTGTTTTTACCGCGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGC                                                                                         <  1:318699/92‑1       ATCCCGCCCGGGTTGTTTTTACCGCGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGC                                                                                         >  2:318699/1‑92                                    GGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGG  <  2:420327/150‑1                                                                                                                                                                                           AATGCGATCCCGCCCGGGTTGTTTTTACCGCGGCGGGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5190425‑5190385 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgggatcgCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGCATGCTCGACAAGTATCGCTCGCCCGAATCGGGCAGG  >  NC_002947/5190422‑5190565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.