New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5254003	48 (1.110)	3 (0.070)	3/242	NT	6.0%	coding (679/912 nt)	PP_4630	MerR family transcriptional regulator
	?	NC_002947	= 5254030	48 (1.160)					coding (652/912 nt)	PP_4630	MerR family transcriptional regulator

GGGCTGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5253849‑5254003 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccgCTGCAGGAGCTTGCGCTGGTCTGCGAACGGCTGAAGCCGGACGCCCTGGTGCTGTTTTCCCATCAGTCGCCCACAGCAGAACTCGCCAGGCACTTCAAGCGCCTGGCGTCGATGCTGGAATGCCCGTTGTTACTGGCTGGTGAAGCAGC  <  NC_002947/5254030‑5253882                                                                                                                                                                                                                                                                                                                  GGGCTGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTC                                                                                                                                                            <  1:913184/150‑1                                     GCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGAATCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGCTGCAGGAGCTTGCGCTGGTCTGCGAACGGC                                                                                                                        <  1:900650/150‑1                                       TTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGCTGCAGGAGCTTGCGCTGGTCTGCGAACGGCTG                                                                                                                      >  1:706101/1‑150                                           CCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGCTGCAGGAGCTTGCGCTGGTCTGCGAACGGCTGAAGC                                                                                                                  <  2:706101/150‑1                                                                                                                                                        GCCGCTGCAGGAGCTTGCGCTGGTCTGCGAACGGCTGAAGCCGGACGCCCTGGTGCTGTTTTCCCATCAGTCGCCCACAGCAGAACTCGCCAGGCACTTCAAGCGCCTGGCGTCGATGCTGGAATGCCCGTTGTTACTGGCTGGTGAAGC     <  2:303072/150‑1                                                                                                                                                           GCTGCAGGAGCTTGCGCTGGTCTGCGAACGGCTGAAGCCGGACGCCCTGGTGCTGTTTTCCCATCAGTCGCCCACAGCAGAACTCGCCAGGCACTTCAAGCGCCTGGCGTCGATGCTGGAATGCCCGTTGTTACTGGCTGGTGAAGCAGC  <  2:466450/150‑1                                                                                                                                                                                                                                                                                                                  GGGCTGCCAGCCAGGCTGTCCTGTACCGCTTCCGCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5253849‑5254003 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagccgCTGCAGGAGCTTGCGCTGGTCTGCGAACGGCTGAAGCCGGACGCCCTGGTGCTGTTTTCCCATCAGTCGCCCACAGCAGAACTCGCCAGGCACTTCAAGCGCCTGGCGTCGATGCTGGAATGCCCGTTGTTACTGGCTGGTGAAGCAGC  <  NC_002947/5254030‑5253882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.