New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5714220 =	66 (1.520)	5 (0.120)	5/244	NT	6.7%	coding (1613/1623 nt)	ubiB	2‑octaprenylphenol hydroxylase
	?	NC_002947	5714263 =	76 (1.830)					intergenic (+33/‑40)	ubiB/hisI	2‑octaprenylphenol hydroxylase/phosphoribosyl‑AMP cyclohydrolase

TGTGGTCCTGGGCGATCGCCGGTACCAGGCCATCGCTGTTCCACTTGATCTCGTCCAGCCAGTCTTTCATCGTCGACTCCAAAGCGGGCCCGCTCCTGTGCCGGGCCCTTTGCGCTAGTGTGCCAGCCACAGGCGCGGCTGGCTATTGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5714372‑5714220 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaAAGGGCCCGGCACAGGAGCGGGCCCGCTTTGGAGTCGACGATGAAAGACTGGCTGGACGAGATCAAGTGGAACAGCGATGGCCTGGTACCGGCGATCGCCCAGGACCACAAGACCGGACGCGTGCTGATGATGGCCTGGATGAACCGTG  >  NC_002947/5714263‑5714411                                                                                                                                                                                                                                                                                                                TGTGGTCCTGGGCGATCGCCGGTACCAGGCCATCGCTGTTCCACTTGATCTCGTCCAGCCAGTCTTTCATCGTCGACTCCAAAGCGGGCCCGCTCCTGTGCCGGGCCCTTTGCGCTAGTGTGCCAGCCACAGGCGCGGCTGGCTATTGGC                                                                                                                                                          <  2:1080333/150‑1                                                                                                      CGGGCCCTTTGCGCTAGTGTGCCAGCCACAGGCGCGGCTGGCTATTGGCGCAAAGGGCCCGGCACAGGAGCGGGCCCGCTTTGGAGTCGACGATGAAAGACTGGCTGGACGAGATCAAGTGGAACAGCGATGGCCTGGTACCGGCGATCG                                                     >  2:465043/1‑150                                                                                                                  GCTAGTGTGCCAGCCACAGGCGCGGCTGGCTATTGGCGCAAAGGGCCCGGCACAGGAGCGGGCCCGCTTTGGAGTCGACGATGAAAGACTGGCTGGACGAGATCAAGTGGAACAGCGATGGCCTGGTACCGGCGATCGCCCAGGACCACA                                         >  1:711723/1‑150                                                                                                                      GTGTGCCAGCCACAGGCGCGGCTGGCTATTGGCGCAAAGGGCCCGGCACAGGAGCGGGCCCGCTTTGGAGTCGACGATGAAAGACTGGCTGGACGAGATCAAGTGGAACAGCGATGGCCTGGTACCGGCGA                                                        <  1:1091614/131‑1                                                                                                                      GTGTGCCAGCCACAGGCGCGGCTGGCTATTGGCGCAAAGGGCCCGGCACAGGAGCGGGCCCGCTTTGGAGTCGACGATGAAAGACTGGCTGGACGAGATCAAGTGGAACAGCGATGGCCTGGTACCGGCGA                                                        >  2:1091614/1‑131                                                                                                                                         GGCTGGCTATTGGCGCAAAGGGCCCGGCACAGGAGCGGGCCCGCTTTGGAGTCGACGATGAAAGACTGGCTGGACGAGATCAAGTGGAACAGCGATGGCCTGGTACCGGCGATCGCCCAGGACCACAAGACCGGACGCGTGCTGATGATG                  <  1:465043/150‑1                                                                                                                                                         AAAGGGCCCGGCACAGGAGCGGGCCCGCTTTGGAGTCGACGATGAAAGACTGGCTGGACGAGATCAAGTGGAACAGCGATGGCCTGGTACCGGCGATCGCCCAGGACCACAAGACCGGACGCGTGCTGATGATGGCCTGGATGAACCGTG  >  1:328588/1‑150                                                                                                                                                                                                                                                                                                                TGTGGTCCTGGGCGATCGCCGGTACCAGGCCATCGCTGTTCCACTTGATCTCGTCCAGCCAGTCTTTCATCGTCGACTCCAAAGCGGGCCCGCTCCTGTGCCGGGCCCTTTGCGCTAGTGTGCCAGCCACAGGCGCGGCTGGCTATTGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5714372‑5714220 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaAAGGGCCCGGCACAGGAGCGGGCCCGCTTTGGAGTCGACGATGAAAGACTGGCTGGACGAGATCAAGTGGAACAGCGATGGCCTGGTACCGGCGATCGCCCAGGACCACAAGACCGGACGCGTGCTGATGATGGCCTGGATGAACCGTG  >  NC_002947/5714263‑5714411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.