New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5786551	32 (0.740)	4 (0.110)	4/206	NT	13.1%	intergenic (+38/‑93)	PP_5068/trxC	hypothetical protein/thioredoxin
	?	NC_002947	= 5786588	27 (0.770)					intergenic (+75/‑56)	PP_5068/trxC	hypothetical protein/thioredoxin

GGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5786382‑5786551 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcgtgcccgcgaaCACCGGCGAAGCCGGT‑GCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAGGCTTGCATCCCGGGCT  <  NC_002947/5786588‑5786440                                                                                                                                                                                                                                                                                                                                  GGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCGGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTG                                                                                                                                                                            <  2:805488/150‑1    GACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGA                                                                                                                                                                         <  1:727701/150‑1        ACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGG                                                                                                                                                                     <  1:488540/150‑1        ACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCGGTGGGAGCGG                                                                                                                                                                     <  2:46298/150‑1          AGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGC                                                                                                                                                                   >  1:791546/1‑150          AGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGC                                                                                                                                                                   >  2:445739/1‑150          AGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGC                                                                                                                                                                       <  2:789119/146‑1          AGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTACTGATTAGCGCCGAATCCTGTGGGAGC                                                                                                                                                                       >  1:789119/1‑146           GTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCG                                                                                                                                                                  >  2:675949/1‑150                     ACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGACCCCTGTGGGAGCGGGCACGCCCGCtcc                                                                                                                                                        <  1:704415/150‑4                                                TTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCCGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGT‑GCAATCCATCA                                                                                                                            >  2:603084/1‑150                                                   CGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGT‑GCAATCCATCACGT                                                                                                                         >  2:914978/1‑150                                                                 GGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGT‑GCAATCCATCACGTTGCCTGCTTCGCGG                                                                                                           <  1:914978/150‑1                                                                               GCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGG                                                                                                                                                                           >  2:138370/1‑73                                                                               GCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGG                                                                                                                                                                           <  1:138370/73‑1                                                                                  GAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCCGTGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGT‑GCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACA                                                                                          <  1:603084/150‑1                                                                                                                                                     TGGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGT‑GCAAGCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGG                       >  2:67657/1‑150                                                                                                                                                      GGGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGT‑GCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGC                      <  2:167409/150‑1                                                                                                                                                       GGAGCGGGCGTGCCCGCGAACACCGGCGAAGCCGGT‑GCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCG                     >  1:675949/1‑150                                                                                                                                                          GCGGGCGTGCCCGCGAACACCGGCGAAGCCGGT‑GCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAG                  >  2:1035482/1‑150                                                                                                                                                              GCGTCCCCGCGAACACCGGCGAAGCCGGT‑GCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAGGCTT              <  1:1082156/150‑1                                                                                                                                                                 TGCCCGCGAACACCGGCGAAGCCGGT‑GCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAGGCTTGCA           <  1:319385/150‑1                                                                                                                                                                    CCGCGAACACCGGCGAAGCCGGT‑GCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGA                                                           <  2:953871/99‑1                                                                                                                                                                    CCGCGAACACCGGCGAAGCCGGT‑GCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGA                                                           >  1:953871/1‑99                                                                                                                                                                          ACACCGGCGAAGCCGGTCGGCAT‑CATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAACCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAGGCTTGCATCCCGGGCT  <  1:607350/150‑1                                                                                                                                                                                                                                                                                                                                  GGGGACTACAGTGAAGTTCGACGGCTGCACCAAGTCCTGGCCAGGCCTTTCGAGGAACAGCCCGGGATGCAAGCCTACGCCGAGCGACCGCCGGAGTGGGGCAAGCACCTGGAAATCAGCTGCTCTTCCTGATTAGCGCCGAATCCTGTGGGAGCGGGCGTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5786382‑5786551 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcgtgcccgcgaaCACCGGCGAAGCCGGT‑GCAATCCATCACGTTGCCTGCTTCGCGGGCACGCCCGCTCCCACAGGATTCGGCGCTAATCAGGAAGAGCAGCTGATTTCCAGGTGCTTGCCCCACTCCGGCGGTCGCTCGGCGTAGGCTTGCATCCCGGGCT  <  NC_002947/5786588‑5786440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.