New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	200753 =	32 (0.740)	6 (0.150)	4/242	NT	13.3%	coding (6259/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	202753 =	48 (1.160)					coding (8259/26049 nt)	PP_0168	putative surface adhesion protein

CACCGAGGTGACCGACGAGCCAGGCACACCAGGTAACGAAGGCGATATCGTCAAGGTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTC  >  NC_002947/200605‑200897                                                                                                                                                     |                                                                                                                                                 ggcaccgcccagcgccaggttctcgaaggttgcaccagtggcgtccaccgccgaggtgatgcccaggctgatctggccagcgtcgttgtaaacgtcatcaccctgcgcagcgtgggtgtacggcgcgctggtttcgccggccttgatgGt                                                                                                                                                 >  1:1066369‑M1/149‑150 (MQ=255) cACCGAGGTGACCGACGAGCCAGGCACACCAGGTAACGAAGGCGATATCGTCAAGGTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGt                                                                                                                                                 <  2:839326/150‑1 (MQ=255)      aGGTGCCGGACGAGCCAGGAACACCAGGTAACGAAGGCGATATCGTCAAGGTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAATCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGAccc                                                                                                                                            <  2:97118/150‑1 (MQ=255)        gTGACCGACGAGCCAGGCACACCAGGTAACGAAGGCGATATCGTCAAGGTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTg                                                                                                                                          >  1:671250/1‑150 (MQ=255)         tcaCCGACGAGCCAGGCACACCAGGTAACGAAGGCGATATCGTCAAGGTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGa                                                                                                                                         <  1:1082778/148‑1 (MQ=255)                     cAGGCACACCAGGTAACGAAGGCGATATCGTCAAGGTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTc                                                                                                                             <  2:846654/150‑1 (MQ=255)                        gCACACCAGGTAACGAAGGCGATATCGTCAAGGGCACCATCACCGCCGACCAGGCTTCGGTCGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGGCGTGCACCTGAGCAACAACGCTCAgg                                                                                                                          >  2:71419/1‑150 (MQ=14)                                  tAACGAAGGCGATATCGTCAAGGTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCaa                                                                                                                <  2:841400/150‑1 (MQ=255)                                  tAACGAAGGCGATATCGTCAAGGCCCCCATCACCGCCGACCAGGCTTCGGTGGCCGAGACCGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCaa                                                                                                                <  2:400002/150‑1 (MQ=255)                                        aGGCGATATCGTCAAGGTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTgg                                                                                                          <  1:1047880/150‑1 (MQ=255)                                        aGGCGATATCGTCAAGGTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTgg                                                                                                          <  1:836893/150‑1 (MQ=255)                                         ggCGATATCGTCAAGGTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGCCGCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGc                                                                                                         >  1:623020/1‑150 (MQ=255)                                                  gTCAAGGTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAgc                                                                                                <  2:484879/150‑1 (MQ=39)                                                       ggTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGcc                                                                                           >  1:440497/1‑150 (MQ=39)                                                              aTCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACAcc                                                                                    >  1:676043/1‑150 (MQ=39)                                                               tCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACAccc                                                                                   >  2:786631/1‑150 (MQ=37)                                                               tCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACAccc                                                                                   >  2:272858/1‑150 (MQ=38)                                                                 aggctgatctggccagcatcgttgtaaacgtcatcgccctgcgcagcgtgggtgtacggcgcgctggtctcgccggccttgatgGTGACCCTGAGCAACAATGCCCAGGTCACCa                                                                                                                    >  1:423871‑M1/85‑115 (MQ=255)                                                                 aggctgatctggccagcatcgttgtaaacgtcatcgccctgcgcagcgtgggtgtacggcgcgctggtctcgccggccttgatgGTGACCCTGAGCAACAATGCCCAGGTCACCa                                                                                                                    <  2:423871‑M1/31‑1 (MQ=255)                                                                   cgccgACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCacga                                                                               <  1:210608/150‑1 (MQ=35)                                                                               ttCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGa                                                                   <  1:119257/150‑1 (MQ=35)                                                                               ttCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGAAGCTCACCGTAAACGCTCAGGTCACCATCAAGGCTGGCCCAACGAGCGCGCGGTAAACACACGACGCGCAAGGCGa                                                                   >  1:466407/1‑150 (MQ=11)                                                                                tCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGAt                                                                  <  1:178034/150‑1 (MQ=35)                                                                                                   aaCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCgg                                               >  1:1080255/1‑150 (MQ=40)                                                                                                   aaCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCgg                                               <  2:671250/150‑1 (MQ=40)                                                                                                    aCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCggg                                              <  1:786631/150‑1 (MQ=40)                                                                                                            cagcgtgggtgtacggcgcgctggtttcgccggccttgatgGTGACCCTGAGCAACAACGCCCAGGTCACCa                                                                                                                    >  1:922772‑M1/42‑72 (MQ=255)                                                                                                            cagcgtgggtgtacggcgcgctggtttcgccggccttgatgGTGACCCTGAGCAACAACGCCCAGGTCACCa                                                                                                                    <  2:922772‑M1/31‑1 (MQ=255)                                                                                                                  tGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCaa                                                                        <  2:265275/110‑1 (MQ=35)                                                                                                                  tGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCaa                                                                        >  1:265275/1‑110 (MQ=35)                                                                                                                           aCCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGt                       <  2:623020/150‑1 (MQ=255)                                                                                                                              aGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCg                    >  1:1053948/1‑150 (MQ=255)                                                                                                                                ccGCTGGCCCACGACCTGGTAGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACACGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCt                  >  1:563142/1‑150 (MQ=255)                                                                                                                                 tggtttcgccagccttgatgGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCAc                         >  1:1031125‑M1/21‑142 (MQ=255)                                                                                                                                 tggtttcgccagccttgatgGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCAc                         <  2:1031125‑M1/122‑1 (MQ=255)                                                                                                                                     ggCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGa             <  2:440497/150‑1 (MQ=255)                                                                                                                                      gCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGAt            >  1:655858/1‑150 (MQ=255)                                                                                                                                       gtcACGACCAGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGTGCGGGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATg           >  1:630709/3‑150 (MQ=14)                                                                                                                                         cACGTCCTGGTCGTGACCCTGAGCAGCGACGCTCAGGTCACCAAGAAGGCTGGCGAGACCAGCGCGCCGTACACCCACAACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATAAGCCTCGGCATCACGTCCGCTGTGGATGTa         >  1:443495/1‑150 (MQ=14)                                                                                                                                             aCCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACg     <  2:676043/150‑1 (MQ=255)                                                                                                                                                tGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTc  >  2:751483/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                 CACCGAGGTGACCGACGAGCCAGGCACACCAGGTAACGAAGGCGATATCGTCAAGGTCACCATCACCGCCGACCAGGCTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCTGGCGAAACCAGCGCGCCGTACACCCACGACGCGCAAGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTCGGCATCACGTCCGCTGTGGATGTAGACGGTC  >  NC_002947/200605‑200897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.