New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1025270 =	37 (0.850)	6 (0.180)	6/200	NT	21.4%	intergenic (‑121/+108)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	1025363 =	15 (0.440)					intergenic (‑214/+15)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein

GCCAGTGCGGTCAAGGTGAATACTTTCAAGGTTAAAGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAA  >  NC_002947/1025121‑1025399                                                                                                                                                      |                                                                                                                                  gCCAGTGCGGTCAAGGTGAATACTTTCAAGGTTAAAGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTg                                                                                                                                   >  2:152880/1‑150 (MQ=255)  gcggctcaagcagcaggtaccgattacgccggtggcgcattccatcgtgagccagccgcttagcgtcaaggtttcccagttcaaggtcagcccgtttgggcgcaatgatttttccggtgtgagtgttgattaagcgttagccagtaccgg                                                                                                                                  <  2:413761‑M1/2‑1 (MQ=255)  ccAGTGCGGTCAAGGTGAATACTTTCAAGGTTAAAGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTgg                                                                                                                                  <  1:14861/150‑1 (MQ=255)   cggctcaagcagcaggtaccgattacgccggtggcgcattccatcgtgagccagccgcttagcgtcaaggtttcccagttcaaggtcagcccgtttgggcgcaatgatttttccggtgtgagtgttgattaagcgttagccagtaccGGc                                                                                                                                 >  1:42671‑M1/148‑150 (MQ=255)    aGTGCGGTCAAGGTGAATACTTTCAAGGTTAAAGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGcc                                                                                                                                <  1:152880/150‑1 (MQ=255)      ctcaagcagcaggtaccgattacgccggtggcgcattccatcgtgagccagccgcttagcgtcaaggtttcccagttcaaggtcagcccgtttgggcgcaatgatttttccggtgtgagtgttgattaagcgttagccagtaccGGCctc                                                                                                                              <  2:664955‑M1/6‑1 (MQ=255)             agcaggtaccgattacgccggtggcgcattccatcgtgagtcagccgcttagcgtcaaggtttcccagttcaaggtcagcccgtttgggcgcaatgatttttccggtgtgagtgttgattaagcgttagccagtaccGGCCTCTTCGCgg                                                                                                                       >  2:18625‑M1/138‑150 (MQ=255)             agcaggtaccgattacgccggtggcgcattccatcgtgagccagccgcttagcgtcaaggtttcccagttcaaggtcagcccgtttgggcgcaatgatttttccggtgtgagtgttgattaagcgttagccagtaccGGCCTCTTCGCgg                                                                                                                       >  2:475926‑M1/138‑150 (MQ=255)              aGGTGAATACTTTAAAGGTTGATCAACCGTAACTAGTCGAGTGATGGCCGGCCTTGTGGCCGTGGTGGAGAGACCTGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCggg                                                                                                                      <  1:861424/150‑1 (MQ=255)                gTGAATACTTTCAAGGTTAAAGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCa                                                                                                                    >  1:1119651/1‑150 (MQ=255)                 ggtaccgattacgccggtggcgcattccatcgtgagccagccgcttagcgtcaaggtttcccagttcaaggtcagcccgtttgggcgcaatgatttttccggtgtgagtgttgattaagcgttagccagtaccGGCCTCTTCGCGGGCaa                                                                                                                   >  2:185131‑M1/134‑150 (MQ=255)                   taccgattacgccggtggcgcattccatcgtgagccagccgcttagcgtcaaggtttcccagttcaaggtcagcccgtttgggcgcaatgatttttccggtgtgagtgttgattaagcgttagccagtaccGGCCTCTTCGCGGGCAAGc                                                                                                                 >  2:65553‑M1/132‑150 (MQ=255)                    aTACTTTCCAGGTTAAGGCTCCCTTTCGTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGGGGTGCCAGGGGTGCCGCGGGATCGCCGGGCAGGATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTGCGCGGGCGAGcc                                                                                                                >  2:619176/1‑150 (MQ=255)                          tacgccggtggcgcattccatcgtgagccagccgcttagcgtcaaggtttcccagttcaaggtcagcccgtttgggcgcaatgatttttccggtgtgagtgttgattaagcgttagcccaacccGGCCTCTTCGCGGGCAAGCCCGCTcc                                                                                                          >  1:308900‑M1/125‑150 (MQ=255)                                  aaaGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTa                                                                                                  >  2:598618/1‑150 (MQ=255)                                    aGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAgg                                                                                                <  1:598618/150‑1 (MQ=255)                                      cTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGATGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCATCAGGTAGGgc                                                                                              >  2:586794/1‑150 (MQ=255)                                         ccTTTCTTTTCTAGTTATGGCCGGCTTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGAACGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCa                                                                                           <  2:282135/150‑1 (MQ=255)                                           tttcttttctAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAgt                                                                                         >  1:78075/1‑150 (MQ=255)                                           tttcttttctAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAgt                                                                                         >  1:74873/1‑150 (MQ=255)                                                 ttctAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCCCCCCCCGGTAGGGCGCAGTGTCCGa                                                                                   >  2:460089/1‑150 (MQ=255)                                                 ttctAGATATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGCGATCGCCGAGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCACGCAAGCCAGCTCCCTCAAGTAGGGCCCAGTGTCCgc                                                                                   >  2:459422/1‑149 (MQ=255)                                                  tctAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGaa                                                                                  >  2:1762/1‑150 (MQ=255)                                                  tctAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGaa                                                                                  <  2:74873/150‑1 (MQ=255)                                                  tctAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGaa                                                                                  <  2:78075/150‑1 (MQ=255)                                                      gTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTg                                                                              >  1:853237/1‑150 (MQ=255)                                                        tATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTc                                                                            <  1:849579/150‑1 (MQ=255)                                                             ccggccTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCgg                                                                                                                       >  1:90289/1‑102 (MQ=255)                                                             ccggccTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCgg                                                                                                                       <  2:90289/102‑1 (MQ=255)                                                             ccggccTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGAt                                                                       <  2:984499/150‑1 (MQ=255)                                                              cggccTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATc                                                                      >  2:783020/1‑150 (MQ=255)                                                                   ttGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCtgtg                                                                 <  1:460089/150‑1 (MQ=255)                                                                   ttGTGGGCCGGGTCATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGTCAGAATCGGGGCGTTGTGTTGGCGGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCtgtg                                                                 <  1:459422/150‑1 (MQ=255)                                                                    tgtgGGCGTGGTGATTGCTGCGGTGTTGCCAGGCGTGCCTCGGGATCGACGGGAGTTAGCCGTGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgg                                                                <  2:262213/150‑1 (MQ=255)                                                                     gtgGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGc                                                                                                                                 >  1:905250/1‑84 (MQ=255)                                                                     gtgGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGc                                                                                                                                 <  2:905250/84‑1 (MQ=255)                                                                       ggtttcccagttcaaggtcagcccgtttgggcgcaatgatttttccggtgtgagtgttgattaagcgttagccagtaccGGCCTCTTCGCGGGCAAGCCCGCTcc                                                                                                          <  2:1055731‑M1/26‑1 (MQ=255)                                                                       ggtttcccagttcaaggtcagcccgtttgggcgcaatgatttttccggtgtgagtgttgattaagcgttagccagtaccGGCCTCTTCGCGGGCAAGCCCGCTcc                                                                                                          >  1:1055731‑M1/80‑105 (MQ=255)                                                                           cGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCggg                                                         <  1:1023299/150‑1 (MQ=255)                                                                                 ttcaaggtcagcccgtttgggcgcaatgatttttccggtgtgagtgttgattaagcgttagccagtaccGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCg                                                           >  1:1017423‑M1/70‑142 (MQ=255)                                                                                 ttcaaggtcagcccgtttgggcgcaatgatttttccggtgtgagtgttgattaagcgttagccagtaccGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCg                                                           <  2:1017423‑M1/73‑1 (MQ=255)                                                                                       gcGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCGCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGaa                                             <  2:85741/150‑1 (MQ=255)                                                                                         ggTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAaga                                           <  2:937444/150‑1 (MQ=255)                                                                                         ggTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAaga                                           <  1:586794/150‑1 (MQ=255)                                                                                         ggTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTGGTGTTGGCCGTGCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAaga                                           <  1:488054/150‑1 (MQ=255)                                                                                              tGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCg                                      <  1:992273/150‑1 (MQ=255)                                                                                              tGCCAGGGGGGCCGCGTGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGACTGCACGCTCAGGAAGGGTACAGTGTCCGAGCCGCGCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCg                                      <  1:982476/150‑1 (MQ=37)                                                                                               gCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCgg                                     >  2:746180/1‑150 (MQ=255)                                                                                                         ccGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGGGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTaa                           <  1:783020/150‑1 (MQ=255)                                                                                                              ggATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCtt                      <  2:1119651/150‑1 (MQ=255)                                                                                                                            aaTCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGTTCCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGATGAGACCGGTACTGGCTAACGCTTAATCAACACTcaca        <  1:641367/150‑1 (MQ=255)                                                                                                                             tgttgattaagcgttagccagtaccGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGa                                              >  2:675791‑M1/26‑111 (MQ=255)                                                                                                                             tgttgattaagcgttagccagtaccGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGa                                              <  1:675791‑M1/86‑1 (MQ=255)                                                                                                                                 gggCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCtgt                                                                  >  2:860501/1‑87 (MQ=255)                                                                                                                                 gggCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCtgt                                                                  <  1:860501/87‑1 (MQ=255)                                                                                                                                  ggCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGaa  <  1:746180/150‑1 (MQ=255)                                                                                                                                  attaagcgttagccagtaccGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCgg                                                          <  1:489192‑M1/74‑1 (MQ=255)                                                                                                                                  attaagcgttagccagtaccGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCgg                                                          >  2:489192‑M1/21‑94 (MQ=255)                                                                                                                                                      |                                                                                                                                  GCCAGTGCGGTCAAGGTGAATACTTTCAAGGTTAAAGCTCCCTTTCTTTTCTAGTTATGGCCGGCCTTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAA  >  NC_002947/1025121‑1025399

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.