New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1273319 =	31 (0.720)	3 (0.080) +GCAGGCGACGCGGT	3/226	NT	8.7%	intergenic (+104/+64)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
	?	NC_002947	3028171 =	40 (0.920)					intergenic (+2/‑220)	PP_2642/pcaY	GntR family transcriptional regulator/aromatic acid chemoreceptor

TGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGCTACCGCACGGGCACGGGTCGTTACGGCCAACGTCCTTCAGGGCGTTGCGTA  >  NC_002947/1273171‑1273468                                                                                                                                                     |                                                                                                                                                      tGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGtt                                                                                                                                                      >  2:872966/1‑150 (MQ=255)   gTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTcg                                                                                                                                                    <  2:1082941/150‑1 (MQ=255)    tACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTcgc                                                                                                                                                   >  2:714841/1‑150 (MQ=255)    tACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTcgc                                                                                                                                                   <  2:1062598/150‑1 (MQ=255)      ccAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCgg                                                                                                                                                 <  1:793831/150‑1 (MQ=255)       cAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCgg                                                                                                                                                 <  2:739631/149‑1 (MQ=255)       cAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCgg                                                                                                                                                 >  1:739631/1‑149 (MQ=255)            ccTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGgcgcgc                                                                                                                                           <  2:922326/150‑1 (MQ=255)             cTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGTCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCANGCGACGNGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGgcgttgt                                                                                                                                          <  1:879404/150‑5 (MQ=255)                    gggCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTccc                                                                                                                                   >  2:1110726/1‑150 (MQ=255)                     ggCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCca                                                                                                                                  >  1:395006/1‑150 (MQ=255)                      gCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCcac                                                                                                                                 >  1:1130597/1‑150 (MQ=255)                         aaCCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAgt                                                                                                                              <  1:978680/150‑1 (MQ=255)                                          gTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCa                                                                                                             <  1:776116/150‑1 (MQ=255)                                             gCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGAt                                                                                                          >  2:395281/1‑150 (MQ=255)                                              ccACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGc                                                                                                                      <  2:863434/137‑1 (MQ=255)                                              ccACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGc                                                                                                                      >  1:863434/1‑137 (MQ=255)                                                 ccTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGAttttt                                                                                                      <  2:730150/150‑1 (MQ=255)                                                  cTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTa                                                                                                     <  2:804576/150‑1 (MQ=255)                                                     tgtCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATcg                                                                                                  <  1:395281/150‑1 (MQ=255)                                                     tgtCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATcg                                                                                                  <  1:564663/150‑1 (MQ=255)                                                        cAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGt                                                                                               <  1:751741/150‑1 (MQ=255)                                                                tGATCCAGAGGCTGGCACGGACACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGAt                                                                                       <  2:71571/150‑1 (MQ=255)                                                                          gCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGt                                                                             <  1:592890/150‑1 (MQ=255)                                                                                   gAAAATGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCActtct                                                                    <  1:1122984/150‑1 (MQ=255)                                                                                    aaaCTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCCcttctt                                                                   <  2:592163/150‑1 (MQ=255)                                                                                     aaCTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTg                                                                  <  1:231073/150‑1 (MQ=255)                                                                                        tgtgggagcgggcgcgcccgcgaacacgggcgaagcccgtgccatccaccgcgtcgcctgcTTCGCGGGCTTGCCCGCTCCCACAGTTTCCGTGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTNTAc                                                               >  2:697131‑M1/62‑150 (MQ=255)                                                                                                         ccgcgaacacgggcgaagcccgtgccatccaccgcgtcgcctgcTTCGCGGGCTTGCCCGCTCCCACAGTGTTCGAGCCAtctct                                                                                                               <  2:715205‑M1/41‑1 (MQ=255)                                                                                                         ccgcgaacacgggcgaagcccgtgccatccaccgcgtcgcctgcTTCGCGGGCTTGCCCGCTCCCACAGTGTTCGAGCCAtctct                                                                                                               >  1:715205‑M1/45‑85 (MQ=255)                                                                                                                   ggCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGCTACCGcacgggcacggg                                    >  1:432891/1‑150 (MQ=255)                                                                                                                          cgGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCCCTCCCATAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCCGGCCCCGTGGCACTTCTTGTACTTCTTCTCGCTACCGCACGGGCACGGGTCGTTAc                             <  1:922902/150‑1 (MQ=255)                                                                                                                             tGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGCTACCGCACGGGCACGGGTCGTTACGGc                          <  2:432891/150‑1 (MQ=255)                                                                                                                                    cACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGCTACCGCACGGGCACGGGTCGTTACGGCCAACGTc                   <  1:872966/150‑1 (MQ=255)                                                                                                                                     aCGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTGCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGCTACCGCACGGGCACGGGTCGTTACGGCCAACGTcc                  <  1:613654/150‑1 (MQ=255)                                                                                                                                            tCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGCTACCGCACGGGCACGGGTCGTTACGGCCAACGTCCTTCAggg           <  1:175146/150‑1 (MQ=255)                                                                                                                                              gCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGCTACCGCACGGGCACGGGTCGTTACGGCCAACGTCCTTCAGGGCg         >  1:702577/1‑150 (MQ=255)                                                                                                                                               cccGTGCTCGCGGGCGCGACTGCTCACCCAGTCGTCGAGCCGCCTGTCAGAGGGTTATCGCGTCATTCGATCAGGCGCCGTGGCACCTCTTGTACTTCTTCTCGCTACCGCACGGGCACGGGTCGCTAAGGCCCACGTCCTTCAGGGCGt        >  2:562289/1‑150 (MQ=255)                                                                                                                                                 cGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGCTACCGCACGGGCACGGGTCGTTACGGCCAACGCCCTGAAGGACGTTg      <  2:395006/150‑1 (MQ=255)                                                                                                                                                  gtgtTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGCTACCGCACGGGCACGGGTCGTTACGGCCAACGTCCTTCAGGGCGTTGc     <  2:1130597/150‑1 (MQ=255)                                                                                                                                                     ttCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGCTACCGCACGAGCAAGGCTCGGGACTGCCAACGTCCTTCAGGGCGTTGCGTa  >  2:640806/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      TGGTACCAGGACCTGTTGGGGGCAAACCGGCGAAAGGCCGCGTAGCCACCTGTGTCAGGCTCATGATCCAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCCACAGTGTTCGAGCCATCTCTCAGATTTTTATCGCGTCAGTCGATCAGGCGCCGTGGCACTTCTTGTACTTCTTCTCGCTACCGCACGGGCACGGGTCGTTACGGCCAACGTCCTTCAGGGCGTTGCGTA  >  NC_002947/1273171‑1273468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.