New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 150642049 (1.130)3 (0.070) 3/244 NT 5.7% coding (312/780 nt) petC ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit
?NC_002947 = 1506462 52 (1.250)coding (354/780 nt) petC ubiquinol‑‑cytochrome c reductase cytochrome c1 subunit

GCGCTACGAGCGGGTGGCTGACGACCTGGGTATCCCGCATGAACTGATGCTCGAGAAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCATGCCTAACGTGCTGG  >  NC_002947/1506285‑1506568
                                                                                                                                       |                                                                                                                                                    
gcgcTACGAGCGGGTGGCTGACGACCTGGGTATCCCGCATGAACTGATGCTCGAGAAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGa                                                                                                                                        >  1:1035050/1‑150 (MQ=255)
   cTACGAGCGGGTGGCTGACGACCTGGGTATCCCGCATGAACTGATGCTCGAGAAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCt                                                                                                                                     <  2:924583/150‑1 (MQ=255)
          cGGGTGGCTGACGACCTGGGTATCCCGCATGAACTGATGCTCGAGAAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGagcctg                                                                                                                              <  2:1035050/150‑6 (MQ=255)
             gTGGCTGACGACCTGGGTATCCCGCATGAACTGATGCTCGAGAAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTc                                                                                                                           >  2:392167/1‑150 (MQ=255)
               ggCTGACGACCTGGGTATCCCGCATGAACTGATGCTCGAGAAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGc                                                                                                                         <  1:907476/150‑1 (MQ=255)
                 cTGACGACCTGGGTATCCCGCATGAACTGATGCTCGAGAAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGccc                                                                                                                       <  1:174443/150‑1 (MQ=255)
                         cTGGGTATCCCGCATGAACTGATGCTCGAGAAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTgcgc                                                                                                               <  2:40161/150‑1 (MQ=255)
                              tATCCCGCATGAACTGATGCTCGAGAAGCTGGTGTTCACAGGTGCCAAGATCGGTTACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTac                                                                                                          >  1:74870‑M2/1‑148 (MQ=255)
                                  ccGCATGAACTGATGCTCGAGAAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGAt                                                                                                      >  1:471075/1‑150 (MQ=255)
                                   cGCATGAACGGATGCTCGAGAAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGAtt                                                                                                     >  2:924639/1‑150 (MQ=255)
                                      aTGAACTGATGCTCGAGAAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTaccgcgcacgcgggcgaccagtgtcaggtcgggcggcgcagcaccgaaccag                                                                                                  <  2:1139‑M1/150‑53 (MQ=255)
                                       tGAACTGATGCTCGAGAAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTAGGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCAATTGGCt                                                                                                 >  2:323536/1‑150 (MQ=255)
                                             gATGCTCGAGAAGCTGGTGTTCACAGGTGCAAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTacac                                                                                           <  2:141323/150‑1 (MQ=255)
                                                    gagaAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCCGATTCATAGCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTg                                                                                    >  1:693948/1‑150 (MQ=255)
                                                    gagaAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTa                                                                                              <  2:752044/140‑1 (MQ=255)
                                                    gagaAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTa                                                                                              >  1:752044/1‑140 (MQ=255)
                                                        aGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCa                                                                                <  1:45413/150‑1 (MQ=255)
                                                           tGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGtt                                                                             >  1:763775/1‑150 (MQ=255)
                                                             gtgtTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTc                                                                           <  1:1067181/150‑1 (MQ=255)
                                                               gtTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTa                                                                         <  2:471075/150‑1 (MQ=255)
                                                                  cacaGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGa                                                                      <  1:756163/150‑1 (MQ=255)
                                                                    caGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAgg                                                                    <  2:212871/150‑1 (MQ=255)
                                                                     aGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGa                                                                   <  2:746199/150‑1 (MQ=255)
                                                                      ggTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGAc                                                                  <  1:376359/150‑1 (MQ=255)
                                                                          ccAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCAt                                                              <  1:275576/150‑1 (MQ=255)
                                                                                   gTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCtt                                                     >  2:107626/1‑150 (MQ=255)
                                                                                    tGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGt                                                                                                                            >  1:976008/1‑78 (MQ=255)
                                                                                    tGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGt                                                                                                                            <  2:976008/78‑1 (MQ=255)
                                                                                      acaccaTGCAGAAAGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATg                                                  >  2:739349/5‑150 (MQ=255)
                                                                                        cacaTGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTaccgcgcacgcgggcgaccagtgtcaggtcgggcggcgcagcaccgaacca                                                                                                   >  1:686134‑M1/1‑48 (MQ=255)
                                                                                        cacaTGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTaccgcgcacgcgggcgaccagtgtcaggtcgggcggcgcagcaccgaacca                                                                                                   <  2:686134‑M1/99‑52 (MQ=255)
                                                                                        cacaTGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTa                                                                                                           <  2:487915‑M2/91‑2 (MQ=255)
                                                                                        cacaTGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTa                                                                                                           >  1:487915‑M2/1‑90 (MQ=255)
                                                                                         acaTGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATgggg                                               >  1:486903/1‑150 (MQ=255)
                                                                                           aTGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACacctacct                                                                                     >  1:505323/1‑110 (MQ=255)
                                                                                           aTGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACacctacct                                                                                     <  2:505323/110‑1 (MQ=255)
                                                                                            tGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTaca                                                                                            <  1:858515/102‑1 (MQ=255)
                                                                                            tGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTaca                                                                                            >  2:858515/1‑102 (MQ=255)
                                                                                                 aTCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTac                                                                                             <  1:325333/96‑1 (MQ=255)
                                                                                                 aTCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTac                                                                                             >  2:325333/1‑96 (MQ=255)
                                                                                                  tCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAacaaca                                      >  2:838203/1‑150 (MQ=255)
                                                                                                   cGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAAcaacaa                                     <  1:107626/150‑1 (MQ=255)
                                                                                                    ggTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAg                                    <  1:924639/150‑1 (MQ=255)
                                                                                                     gTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAgg                                   >  2:847520/1‑150 (MQ=255)
                                                                                                     gTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAgg                                   >  2:617718/1‑150 (MQ=255)
                                                                                                      tATGAAGCCCAGCGACGCCAAGACCTGGTGCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGAGTGGCTTTACACCTACCCGCGCAGTTTCTATGAGGACCCATCCCGCCCGTATGGGTTGCAcaacaaacg                                  >  2:516052/1‑147 (MQ=255)
                                                                                                            gCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACAACTACCTGCGCAGATTCTATAAGGACCCAACCCTCGCTTATAGGGTGAACAACAAGGTATTcac                            >  2:456570/1‑148 (MQ=255)
                                                                                                                    aCGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTg                    <  1:91291/150‑1 (MQ=255)
                                                                                                                       ccAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCa                 >  1:124940/1‑150 (MQ=255)
                                                                                                                       ccAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCa                 >  1:1015861/1‑150 (MQ=255)
                                                                                                                        cAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCAt                >  1:506979/1‑150 (MQ=255)
                                                                                                                        cAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCAt                >  1:592686/1‑150 (MQ=255)
                                                                                                                              cTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTaccgaaccaggtcttggcgtcgctgggcttcataccgatctgcatgtggtcaccgatcttggcacctgtgaacaccagcttctcgagcatcagttcat          <  2:1139‑M2/150‑99 (MQ=255)
                                                                                                                              cTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAg                                    <  2:767320/124‑1 (MQ=255)
                                                                                                                              cTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAg                                    >  1:767320/1‑124 (MQ=255)
                                                                                                                               tGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTaccgaaccaggtcttggcgtcgctgggcttcataccgatctgcatgtg                                                            <  2:686134‑M2/99‑49 (MQ=255)
                                                                                                                               tGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTaccgaaccaggtcttggcgtcgctgggcttcataccgatctgcatgtg                                                            >  1:686134‑M2/1‑51 (MQ=255)
                                                                                                                                 gTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCACTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCATGCCTAACGt       <  2:486903/150‑1 (MQ=255)
                                                                                                                                      gTaccgcgcacgcgggcgaccagtgtcaggtcgggcggcgcagcaccgaaccaggtcttggcgtcgctgggcttcataccgatctgcatgtggtaaccgatcttggcacctgtgaacaccagcttctcgagcatcagttcatgcgggata  >  1:74870‑M1/1‑2 (MQ=255)
                                                                                                                                      gTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATggg                                                <  2:1011656/104‑1 (MQ=255)
                                                                                                                                      gTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATggg                                                >  1:1011656/1‑104 (MQ=255)
                                                                                                                                       taccgcgcacgcgggcgaccagtgtcaggtcgggcggcgcagcaccgaaccaggtcttggcgtcgctgggcttcataccgatctgcatgtg                                                            <  2:487915‑M1/91‑91 (MQ=255)
                                                                                                                                       taccgcgcacgcgggcgaccagtgtcaggtcgggcggcgcagcaccgaaccaggtcttggcgtcgctgggcttcataccgatctgcatgtg                                                            >  1:487915‑M1/1‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                                    
GCGCTACGAGCGGGTGGCTGACGACCTGGGTATCCCGCATGAACTGATGCTCGAGAAGCTGGTGTTCACAGGTGCCAAGATCGGTGACCACATGCAGATCGGTATGAAGCCCAGCGACGCCAAGACCTGGTTCGGTGCTGCGCCGCCCGACCTGACACTGGTCGCCCGCGTGCGCGGTACCGATTGGCTTTACACCTACCTGCGCAGTTTCTATGAGGACCCATCCCGCCCTTATGGGGTGAACAACAAGGTATTCCCGAACGTTGGCATGCCTAACGTGCTGG  >  NC_002947/1506285‑1506568

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.