New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2719748 = | 28 (0.650) | 3 (0.070) | 3/242 | NT | 9.7% | coding (51/609 nt) | PP_2379 | cytochrome oxidase biogenesis protein |
? | NC_002947 | 2719779 = | 29 (0.700) | coding (82/609 nt) | PP_2379 | cytochrome oxidase biogenesis protein |
GTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAGCTTT > NC_002947/2719602‑2719886 | tgggtgaagccgaagaagcccatcggcatgctgccgtaaaagctcgacagggtgcgcacgttaccttgcgggtctttgaggctgaacttgcgcccgaggatttcgttgctcatgttcttgccgtacttgaactcgagcccccgggccggg > 1:109443‑M1/147‑150 (MQ=255) tgggtgaagccgaagaagaccatcggcatgctgccgtaaaagctcgacagggtgcgcacgttaccttgcgggtctttgaggctgaacttgcgcccgaggatttcgttgctcatgttcttgccgtacttgaactcgagcccccgggccggg > 1:818928‑M1/147‑150 (MQ=255) tAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGc > 2:722638/1‑150 (MQ=255) cccTCTTTGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCctgctg < 2:62125/150‑1 (MQ=255) cccTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCAGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCGTGGCctgctg > 1:573243/1‑150 (MQ=255) ccTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTgg < 1:722638/150‑1 (MQ=255) ctGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAg < 1:217585/150‑1 (MQ=255) cgtaaaagctcgacagggtgcgcacgttaccttgcgggtctttgaggctgaacttgcgcccgaggatttcgttgctcatgttcttgccgtacttgaactcgagcccccgggcCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCggg > 2:1036638‑M1/113‑150 (MQ=255) ccGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGc > 2:871418/1‑113 (MQ=255) ccGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGc < 1:871418/113‑1 (MQ=255) cgatctgACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTTTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAg < 1:560063/144‑1 (MQ=255) aCCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGATGGCGGGCGGGAGCCCTGCCCGGGGGCCCGAggcgatcg > 2:560063/1‑143 (MQ=255) cGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCaa < 1:202094/150‑1 (MQ=255) cGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACa > 1:938362/1‑150 (MQ=255) gggCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCCGCCAGGCTGCGGGCCGGGCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGa < 1:467798/150‑1 (MQ=255) ggCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAAc < 1:83313/150‑1 (MQ=255) ccTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGaaa > 2:914042/1‑150 (MQ=255) ttCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATc < 2:303680/150‑1 (MQ=255) ccTGTAAAGGATGGTTTAATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTc < 2:634935/150‑1 (MQ=255) tGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCgg < 1:914042/150‑1 (MQ=255) tAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGgc < 1:809312/150‑1 (MQ=255) ttgcgcccgaggatttcgttgctcatgttcttgccgtacttgaactcgagcccccgggcCGGGCTTGGCCTGCTGGCAGGCTGCa > 1:640447‑M1/60‑85 (MQ=255) ttgcgcccgaggatttcgttgctcatgttcttgccgtacttgaactcgagcccccgggcCGGGCTTGGCCTGCTGGCAGGCTGCa < 2:640447‑M1/26‑1 (MQ=255) gATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAg > 2:892821/1‑150 (MQ=255) ttCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGc < 2:113875/150‑1 (MQ=255) aatgaTCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCgg < 2:497130/131‑1 (MQ=255) aatgaTCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCgg > 1:497130/1‑131 (MQ=255) aatgaTCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCaaa > 1:293578/1‑150 (MQ=255) aatgaTCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCaaa < 2:938362/150‑1 (MQ=255) atgaTCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGGGTTCAAGTCCGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAg > 2:583358/1‑150 (MQ=255) aTCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGAcc > 2:44519/1‑150 (MQ=255) ccGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTaa > 2:885793/1‑150 (MQ=255) cGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAAc < 2:293578/150‑1 (MQ=255) gTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTg < 2:683955/150‑1 (MQ=255) aTGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGCTCACGTACGGCAACAAACGGAGGAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAGCttt > 1:981162/1‑150 (MQ=255) tcGGGCTTGGCCTGCTGGCAGGCTGCAGCGCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCaa > 1:758793/1‑113 (MQ=255) tcGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTc > 2:1071632/1‑50 (MQ=255) tcGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTc < 1:1071632/50‑1 (MQ=255) tcGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCaa < 2:758793/113‑1 (MQ=255) | GTCGGGTAGAACCCCTCTGGGTGTCATGCCAGAATGCCCCGGTTTTTCGACCGGCCCGTCCCGAGGGCCGGCACCTTCCCTGTAAAGGATGGTTTCATGAATGATCTTTTGACCCGGCGTGCGGTTGTCGCCGGCATGGGCGTTCTCGGGCTTGGCCTGCTGGCAGGCTGCAGCCCGGCCCGGGGGCTCGAGTTCAAGTACGGCAAGAACATGAGCAACGAAATCCTCGGGCGCAAGTTCAGCCTCAAAGACCCGCAAGGTAACGTGCGCACCCTGTCGAGCTTT > NC_002947/2719602‑2719886 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |