| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2786795 | 27 (0.620) | 3 (0.070) | 3/236 | NT | 10.7% | intergenic (‑84/‑238) | alx/ahpC | alkaline‑induced transporter/peroxiredoxin/alkylhydroperoxide reductase small subunit |
| ? | NC_002947 | = 2786823 | 25 (0.620) | intergenic (‑112/‑210) | alx/ahpC | alkaline‑induced transporter/peroxiredoxin/alkylhydroperoxide reductase small subunit | |||||
GCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCAGAGTTCAGGTCCGCAATCCTTTGCTCAGCCCGTTCCCTTCTATTAAATAACCCCAGTTATAGCCAAAACCAATCGAAA > NC_002947/2786651‑2786943 | gCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATggg < 2:713055/150‑1 (MQ=255) gTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGt > 1:755858/1‑150 (MQ=255) gACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCgt < 2:744448‑M2/150‑3 (MQ=255) gACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCgt < 2:744293‑M2/150‑3 (MQ=255) gACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTAGCACATGGGCTTGAGCGTAGACCCGTTTGCCCgt > 2:467482‑M2/1‑148 (MQ=255) gtgtTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACgggcaaacggttctacgctcaagcccatgtgatac < 1:863235‑M1/150‑36 (MQ=255) gAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATgg > 2:381164/1‑150 (MQ=255) gAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATgg < 1:3094/150‑1 (MQ=255) aGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATcaca > 1:505039/1‑108 (MQ=255) aGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATcaca < 2:505039/108‑1 (MQ=255) gAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCTACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATggggg > 1:839567/1‑149 (MQ=255) agagCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGAGCTGGGGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACAt > 2:427173/1‑150 (MQ=255) agagCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACAt < 2:755858/150‑1 (MQ=255) ccccTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGc > 2:712408/1‑150 (MQ=255) tcctTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCgtga > 2:1128541‑M2/1‑105 (MQ=255) tcctTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCgtga < 1:1128541‑M2/109‑5 (MQ=255) cctTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCAGAGt > 1:1026552/1‑150 (MQ=255) gTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCAGAGTTCAGGTcc < 1:744448/150‑1 (MQ=255) gTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCAGAGTTCAGGTcc < 1:744293/150‑1 (MQ=255) tCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTAACAATTGCAGAGTTCAGGTCCg > 1:335659/1‑150 (MQ=255) gACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCtt > 1:1038026/1‑73 (MQ=255) gACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCtt < 2:1038026/73‑1 (MQ=255) gACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCAGAGTTCAGGTCCGCa > 2:497578/1‑150 (MQ=255) aaGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCaga < 2:965372/129‑1 (MQ=255) aaGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCaga > 1:965372/1‑129 (MQ=255) aGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCAGAGTTCAGGTCCGCAATCCTTTGCTCAGccc > 1:409108/1‑150 (MQ=255) gATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCAGAGTTCAGGTCCGCAATCCTTTGCTCAGCCCGtt < 2:1026552/150‑1 (MQ=255) tCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGa > 1:471259/1‑89 (MQ=255) tCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGa < 2:471259/89‑1 (MQ=255) gcggcTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCAGAGTTCAGGTCCGCAATCATTTGCTCAGCACGTTCCCTTCTATTa > 2:6811/1‑150 (MQ=255) cTTGGCAGCCGTCAGAGGGGCCCGGTATCACgggcaaacgggtctacgctcaagcccat > 2:351181‑M1/1‑31 (MQ=255) cTTGGCAGCCGTCAGAGGGGCCCGGTATCACgggcaaacgggtctacgctcaagcccat < 1:351181‑M1/59‑29 (MQ=255) gTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCAGAGTTCAGGTCCGCAATCCTTTGCTCAGCCCGTTCCCTTCTATTAAATAACCCCAGTta > 2:27631/1‑150 (MQ=255) agGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCAGAGTTCAGGTCCGCAATCCTTTGCTCAGCCCGTTCCCTTCTATTAAATAACCCCAGTTATAGcc < 2:409108/150‑1 (MQ=255) gCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCAGAGTTCAg > 2:548188/1‑90 (MQ=255) gCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCAGAGTTCAg < 1:548188/90‑1 (MQ=255) ccGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCAGAGTTCAGGTCCGCAATCCTTTGCTCAGCCCGTTCCCTTCTATTAAATAACCCCAGTtata < 2:636862/141‑1 (MQ=255) ccGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCAGAGTTCAGGTCCGCAATCCTTTGCTCAGCCCGTTCCCTTCTATTAAATAACCCCAGTtata > 1:636862/1‑141 (MQ=255) gTATCACATGGGCTTGAGCGTAGAACCGTTTGCCCgtgataccgggcccctctgacggctgccaagccgccatgtcggatcactgttgccttgcaacgtcgacattcaaggaggggctcatgacagctctgcaatcattcctcacaacac < 1:863235‑M2/150‑116 (MQ=255) tCACgggcaaacgggtctacgctcaagcccatgtgataccgggcccctctgacggctgccaagccgccatgtcggatcactgttgccttgcaacgtcgacattcaagga < 1:1128541‑M1/109‑106 (MQ=255) tCACgggcaaacgggtctacgctcaagcccatgtgataccgggcccctctgacggctgccaagccgccatgtcggatcactgttgccttgcaacgtcgacattcaagga > 2:1128541‑M1/1‑4 (MQ=255) acaTGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCAGAGTTCAGGTCCGCAATCCTTTGCTCAGCCCGTTCCCTTc < 2:201674/112‑1 (MQ=255) acaTGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCAGAGTTCAGGTCCGCAATCCTTTGCTCAGCCCGTTCCCTTc > 1:201674/1‑112 (MQ=255) aCgggcaaacgggtctacgctcaagcccatgtgctaccgggcccctctgacggctgccaagccgccatgtcggatcactgttgccttgcaacgtcgacattcaaggaggggctcatgacagctctgcaatcattcctcacaacacctgtc > 2:467482‑M1/1‑2 (MQ=255) aCgggcaaacgggtctacgctcaagcccatgtgataccgggcccctctgacggctgccaagccgccatgtcggatcactgttgccttgcaacgtcgacattcaaggaggggctcatgacagctctgcaatcattcctcacaacacctgtc < 2:744293‑M1/150‑149 (MQ=255) aCgggcaaacgggtctacgctcaagcccatgtgataccgggcccctctgacggctgccaagccgccatgtcggatcactgttgccttgcaacgtcgacattcaaggaggggctcatgacagctctgcaatcattcctcacaacacctgtc < 2:744448‑M1/150‑149 (MQ=255) | GCCACAACCAGGCGCTGGTACCGAGGACAGGTGTTGTGAGGAATGATTGCAGAGCTGTCATGAGCCCCTCCTTGAATGTCGACGTTGCAAGGCAACAGTGATCCGACATGGCGGCTTGGCAGCCGTCAGAGGGGCCCGGTATCACATGGGCTTGAGCGTAGACCCGTTTGCCCGTGATACCGAATGGGGAGCTGTTACATTTCTTTGCCAGTGCAGAGTTCAGGTCCGCAATCCTTTGCTCAGCCCGTTCCCTTCTATTAAATAACCCCAGTTATAGCCAAAACCAATCGAAA > NC_002947/2786651‑2786943 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |