| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3839257 = | 27 (0.620) | 2 (0.050) | 4/240 | NT | 8.1% | coding (137/1158 nt) | PP_3389 | membrane protein |
| ? | NC_002947 | 3839280 = | 20 (0.490) | coding (160/1158 nt) | PP_3389 | membrane protein | |||||
AGGTTTTATAATGTATCTTATCGAATGGGGATTCTGGCAGATGGCAACTCAGTCAGAAGCTGCACGTAGAACGTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAA > NC_002947/3839111‑3839406 | gctatgccggttccgaaaattatcccaggcagcaccccgccgatcgtgactatcgtaatgggcccgcgcttgtcttctaagccgccacagccgctttccatgtgggtttcattgaatgcataaacagggccgcgtatgaggggtgtTTCa > 1:522981‑M1/147‑150 (MQ=255)gctatgccggttccgaaaattatcccaggcagcaccccgccgatcgtgactagcgtaatgaggccgcgcttctcttctgagccgccacagcgcatttccatgtgggtttcattgaatgcataaacagggccgcgtatgaggggtgtTTCa > 2:1070055‑M1/147‑150 (MQ=255)gctatgccggttccgaaaattatcccaggcagcaccccgccgatcgtgactagcgtaatgaggccgcgcttctcttctgagccgccacagcgcatttccatgtgggtttcattgaatgcataaacagggccgcgtatgaggggtgtTTCa > 1:880878‑M1/147‑150 (MQ=255) tatgccggttccgaaaattatcccaggcagcaccccgccgatcgtgactagcgtaatgaggcagcgcttctcttctgagccgccacagcgcatttccacgcgggattcattgaatgcataaacagggccgcgtaggaggggtgttcgact < 2:401534‑M1/6‑6 (MQ=255) tataATGTATCTTATCGAATGGGGATTCTGGCAGATGGCAACTCAGTCAGAAGCTGCACGTAGAACGTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTc > 1:401534/1‑150 (MQ=255) ataATGTATCTTATCGAATGGGGATTCTGGCAGATGGCAACTCAGTCAGAAGCTGCACGTAGAACGTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTc < 2:381138/142‑1 (MQ=255) ataATGTATCTTATCGAATGGGGATTCTGGCAGATGGCAACTCAGTCAGAAGCTGCACGTAGAACGTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTc > 1:381138/1‑142 (MQ=255) aaTGTTTCCTATCGAATGGGGATTCTGGCAGATGGCAACTCAGTCAGAAGCTGCACGTAGAACGTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCg < 2:79302/150‑1 (MQ=255) aTGTATCTTATCGAATGGGGATTCTGGAAGATGGCAACTCAGTCAGAAGCTGCACGTAGAACGTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGAGTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCgg > 1:344736/1‑150 (MQ=255) ttATCGAATGGGGATTCTGGCAGATGGCAACTCAGTCAGAAGCTGCACGTAGAACGTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTg > 1:440304/1‑150 (MQ=255) gAATGGGGATTCTGGCAGATGGCAACTCAGTCAGAAGCTGCACGTAGAACGTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAaca > 2:221208/1‑150 (MQ=255) gAATGGGGATTCTGGCAGATGGCAACATATTCAGAAGCTGCACGTAGAACGTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAaca > 1:870629/1‑150 (MQ=255) aaTGGGGATTCTGGCAGATGGCAACTCAGTCAGAAGCTGCACGTAGAACGTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAacac < 1:668472/150‑1 (MQ=255) aaTGGGGATTCTGGCAGATGGCAACTCAGTCAGAAGCTGCACGTAGAACGTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAacac < 2:440304/150‑1 (MQ=255) aTGGGGATTCTGGCAGATGGCAACTCAGTCAGAAGCTGCACGTAGAACGTACGAAGCAGGGATGACACCAGCAGAAAAGAACGCAAACAGAGATGTTTATGAGGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAACAcc > 1:569242/1‑150 (MQ=255) ggggATTCTGGCAGATGGCAACTCAGTCAGAAGCTGCACGTAGAACGTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAACAcccc < 1:221208/150‑1 (MQ=255) ggggATTCTGGCAGATGGCAACTCAGTCAGAAGCTGCACGTAGAACGTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAACAcccc < 2:1103039/150‑1 (MQ=255) ggCAACTCAGTCAGAAGCTGCACGTAGAACGTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAACCACCCCTCCTACGCGGCCCTGt < 2:1093204/150‑1 (MQ=255) aCTCAGTCAGAAGCTGCACGTAGAACGTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAACACCCCTCATACGCGGCCCTGTTTAt > 1:489566/1‑150 (MQ=255) agtcagAAGCTGCACGTAGAACGTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAACACCCCTCATACGCGGCCCTGTTTATGCAt < 1:447974/150‑1 (MQ=255) aCGTAGAACGTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCca > 2:319156/1‑150 (MQ=255) gTAGAACGTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCcaca > 2:207793/1‑150 (MQ=255) tAGAACGTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACAt < 1:450931/150‑1 (MQ=255) gTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAACACCCCTc < 1:238792/106‑1 (MQ=255) gTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAACACCCCTc > 2:238792/1‑106 (MQ=255) tACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAAt > 2:479567/1‑149 (MQ=255) tACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAAt < 1:479567/149‑1 (MQ=255) tgagccgccacagcgcatttccatgtgggtttcattgaatgcataaacagggccgcgtatgaggggtgtTTCAc > 2:104851‑M1/70‑74 (MQ=255) tgagccgccacagcgcatttccatgtgggtttcattgaatgcataaacagggccgcgtatgaggggtgtTTCAc < 1:104851‑M1/5‑1 (MQ=255) aaGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCt > 1:1039132/1‑150 (MQ=255) gggATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAACACACCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGACATGCGCTGTggc > 2:204492/1‑150 (MQ=255) gcagAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCagaagag < 1:834369/150‑1 (MQ=255) aagaTTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGc < 2:1039132/149‑1 (MQ=255) aTTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAg > 2:1120283/1‑150 (MQ=255) cgtatgaggggtgtTTCACTTTTCCCGGGTAA‑GTGAAACACCCCTCATACGCGGCCCTGTTTATGCAtt < 1:678632‑M1/55‑1 (MQ=255) cgtatgaggggtgtTTCACTTTTCCCGGGTAA‑GTGAAACACCCCTCATACGCGGCCCTGTTTATGCAtt > 2:678632‑M1/15‑69 (MQ=255) atgaaGAGATTCACTTTTCCCGGGTAA‑GTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGtgctgc > 2:939902/1‑150 (MQ=255) ggtgtTTCACTTA‑CCCGGGAAAAGTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCagaagagaa < 2:121884‑M1/100‑1 (MQ=255) ggtgtTTCACTTA‑CCCGGGAAAAGTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCagaagagaa > 1:121884‑M1/6‑105 (MQ=255) aTTCACTTTTCCCGGGTAA‑TTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTc > 2:1029767/1‑111 (MQ=255) aTTCACTTTTCCCGGGTAA‑TTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTc < 1:1029767/111‑1 (MQ=255) TTCACTTTTCCCGGGTAA‑GTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATaa > 1:939902‑M1/1‑150 (MQ=255) TTCACTTTTCCCGGGTAA‑GTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATaa > 1:207793‑M1/1‑150 (MQ=255) | AGGTTTTATAATGTATCTTATCGAATGGGGATTCTGGCAGATGGCAACTCAGTCAGAAGCTGCACGTAGAACGTACGAAGCAGGGATGACACCAGCAGAAAAGCGCGCAAATAGAGATTTTTATGAAGGCGACCTGAATGAAGAGATTCACTTTTCCCGGGTAA‑GTGAAACACCCCTCATACGCGGCCCTGTTTATGCATTCAATGAAACCCACATGGAAATGCGCTGTGGCGGCTCAGAAGAGAAGCGCGGCCTCATTACGCTAGTCACGATCGGCGGGGTGCTGCCTGGGATAA > NC_002947/3839111‑3839406 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |