New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5158456 =	43 (0.990)	3 (0.070)	3/246	NT	6.3%	coding (504/1833 nt)	PP_4542	ABC transporter ATP‑binding protein/permease
	?	NC_002947	5158532 =	47 (1.120)					coding (580/1833 nt)	PP_4542	ABC transporter ATP‑binding protein/permease

CGCTGGCAAAACCATACCTATGTGCTCAAGCAGAGCCTGAACTTCTTTCAGAGCGACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTACATTGCAGCGCTGTTCTACTTCGTGCCACGGGTCAAGGAGCGCTCGGTGGTGTCTTCGGACGCAC  >  NC_002947/5158307‑5158604                                                                                                                                                      |                                                                                                                                                     tagtcggtatgggcgaacagcttcagcgttgcgatgttggtgtagccgtcgacgatacgccccatcagcttggaacgtgcgtccgaagacaccaccgagcgctccttgacccgtggcacgaagtagaacagcgctgcaatgtagctgacg                                                                                                                                                      <  2:167573‑M1/1‑1 (MQ=255)   gtcggtatgggcgaacagcttcagcgttgcgatgttggtgtagccgtcgacgatacgccccatcagcttggaacgtgcgtccgaagacaccacagagcgctccttgacccgtggcacgaagtagaacagcgctgcaatgtagctgacGAt                                                                                                                                                    <  2:444940‑M1/3‑1 (MQ=255)   gtcggtatgggcgaacagcttcagcgttgcgatgttggtgtagccgtcgacgatacgccccatcagcttggaacgtgcgtccgaagacaccacagagcgctccttgacccgtggcacgaagtagaacagcgctgcaatgtagctgacGAt                                                                                                                                                    <  2:444595‑M1/3‑1 (MQ=255)   atagCAAAACCATACCTCTGTGCTCAAGCAGAGCCTGAACTTCTTTCAGAGCGACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGAt                                                                                                                                                    <  1:156014/147‑1 (MQ=255)    tcggtatgggcgaacagcttcagcgttgcgatgttggtgtagccgtcgacgatacgccccatcagcttggaacgtgcgtccgaagacaccaccgagcgctccttgacccgtggcacgaagtagaacagcgctgcaatgtagctgacGATc                                                                                                                                                   <  1:646624‑M1/4‑1 (MQ=255)        aaaaCCATACCTATGTGCTCAAGCAGAGCCTGAACTTCTTTCAGAGCGACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTAcc                                                                                                                                               >  1:914336/1‑149 (MQ=255)         aaaCCATACCTATGTGCTCAAGCAGAGCCTGAACTTCTTTCAGAGCGACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGGCAATTAGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGc                                                                                                                                              <  2:116188/150‑1 (MQ=255)              aTACCTATGTGCTCAAGCAGAGCCTGAACTTCTTTCAGAGCGACTTCGCCGGGCGTATTGCACAGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCa                                                                                                                                         >  1:774221/1‑150 (MQ=255)                  cTATGTGCTCAAGCAGAGCCTGAACTTCTTTCAGAGCGACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTc                                                                                                                                     >  2:417096/1‑150 (MQ=255)                     tgtgCTCAAGCAGAGCCTGAACTTCTTTCAGAGCGACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCt                                                                                                                                  <  1:417096/150‑1 (MQ=255)                      gtgCTCAAGCAGAGCCTGAACTTCTTTCAGAGCGACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTg                                                                                                                                 <  2:774221/150‑1 (MQ=255)                              gCAGAGCCTGAACTTCTTTCAGAGCGACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGtt                                                                                                                         >  2:200817/1‑150 (MQ=255)                                agagCCTGAACTTCTTTCAGAGCGACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCg                                                                                                                       >  1:516915/1‑150 (MQ=255)                                 gagCCTGAACTTCTTTCAGAGCGACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGc                                                                                                                      >  1:1117399/1‑150 (MQ=255)                                    ccTGAACTTCTTTCAGAGCGACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGa                                                                                                                   <  1:421089/150‑1 (MQ=255)                                    ccTGAACTTCTTTCAGAGCGACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGa                                                                                                                   <  1:555637/150‑1 (MQ=255)                                     cTGAACTTCTTTCAGAGCGACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGTCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAg                                                                                                                  >  1:726164/1‑150 (MQ=255)                                           ttcttTCAGAGCGACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGa                                                                                                                   >  2:322866/1‑143 (MQ=255)                                           ttcttTCAGAGCGACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGa                                                                                                                   <  1:322866/143‑1 (MQ=255)                                           ttcttTCAGAGCGACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGAc                                                                                                            >  2:506196/1‑150 (MQ=255)                                           ttcttTCAGAGCGACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGAc                                                                                                            >  1:1082718/1‑150 (MQ=255)                                              tttCAGAGCGACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGGCGTGGAGGCGGTGGACGCGCTATGCCCAGTTCTGGCCAATTTCATCGCCTCGCTGGTGCTGTTCGCCGAGGCCGACTgg                                                                                                         >  1:519785/1‑150 (MQ=255)                                              tttCAGAGCGACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTgg                                                                                                         >  1:376678/1‑150 (MQ=255)                                              tttCAGAGCAACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTgg                                                                                                         >  1:163565/1‑150 (MQ=255)                                                    agCGACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTg                                                                                                   <  2:1082718/150‑1 (MQ=255)                                                                            cgtgcgtccgaagacaccaccgagcgctccttgacccgtggcacgaagtagaacagcgctgcaatgtagctgacGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATc                                                                           >  1:1027673‑M1/75‑150 (MQ=255)                                                                             aGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGAt                                                                            <  2:118436/148‑1 (MQ=255)                                                                             aGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGAt                                                                            >  1:118436/1‑148 (MQ=255)                                                                                     atGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTAc                                                                  >  2:468399/1‑150 (MQ=255)                                                                                      tGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATGGTCAGCTACa                                                                 >  1:444595/1‑150 (MQ=255)                                                                                      tGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTACa                                                                 >  1:444940/1‑150 (MQ=255)                                                                                         aGACCGGCAATTCGCTGCGCGATTCCGGCGTGCAGGCGGAGGACGCGCTATGGCATGTGCTGATCTACGCCCTCACCTCGGTGGTGCTGTTCGCCGAGGTCGACTGGCGCCTGATGCTACCGCTGCTGGCGTGGCTCGTCAGCCACATTg                                                              >  2:118371/1‑150 (MQ=255)                                                                                           aCCGGCAATTCGCTGCGAGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTACATTGCa                                                            <  1:697973/150‑1 (MQ=255)                                                                                                   ttCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGGGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTACATTGCAGCGCTGtt                                                    <  2:18633/150‑1 (MQ=255)                                                                                                        tGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTACATTGCAGCGCTGTTCTACt                                               >  2:378970/1‑150 (MQ=255)                                                                                                            cgATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTACATTGCAGCGCTGTTCTACTTCGt                                           <  2:1117399/150‑1 (MQ=255)                                                                                                                   gccgTGCATGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTACATTGCAGCGCTGTTCTACTTCGTGCCACgg                                    >  2:373767/1‑150 (MQ=255)                                                                                                                   gccgTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCCTCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTACATTGCAGCGCTGTTCTACTTCCTGCCACgg                                    >  2:22279/1‑150 (MQ=255)                                                                                                                   gccgTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTACATTGCAGCGCTGTTCTACTTCGTGCCACgg                                    <  2:519785/150‑1 (MQ=255)                                                                                                                   gccgTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTACATTGCAGCGCTGTTCTACTTCGTGCCACgg                                    <  1:129713/150‑1 (MQ=255)                                                                                                                      gTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTACATTGCAGCGCTGTTCTACTTCGTGCCACGGGTc                                 <  2:376678/150‑1 (MQ=255)                                                                                                                      acgaagtagaacagcgctgcaatgtagctgacGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCa                                                                       >  2:311011‑M1/33‑112 (MQ=255)                                                                                                                      acgaagtagaacagcgctgcaatgtagctgacGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCa                                                                       <  1:311011‑M1/80‑1 (MQ=255)                                                                                                                           ggCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTACATTGCAGCGCTGTTCTACTTCGTGCCACGGGTCAAGGa                            <  2:163565/150‑1 (MQ=255)                                                                                                                                    cgcgCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTACATTGCAGCGCTGTTCTACTTCGTGCCACGGGTCAAGGAGCGCTCggt                   <  1:506196/150‑1 (MQ=255)                                                                                                                                     gcgcTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTACATTGCAGCGCTGTTCTACTTCGTGCCACGGGTCAAGGAGCGCTCggtg                  <  2:914336/150‑1 (MQ=255)                                                                                                                                     gcgcTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTACATTGCAGCGCTGTTCTACTTCGTGCCACGGGTCAAGGAGCGCTCggtg                  <  1:378970/150‑1 (MQ=255)                                                                                                                                       gcTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTACATTGCAGCGCTGTTCTACTTCGTGCCACGGGTCAAGGAGCGCTCggtggt                >  2:928603/1‑150 (MQ=255)                                                                                                                                         tATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTACATTGCAGCGCTGTTCTACTTCGTGCCACGGGTCAAGGAGCGCTCGGTGgtgt              >  1:359140/1‑150 (MQ=255)                                                                                                                                             gCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTACATTGCAGCGCTGTTCTACTTCGTGCCACGGGTCAAGGAGCGCTCGGTGGTGTCTTc          <  1:1060077/150‑1 (MQ=255)                                                                                                                                                tgtgCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTACATTGCAGCGCTGTTCTACTTCGTGCCACGGGTCAAGGAGCGCTCGGTGGTGTCTTCGGa       >  2:959141/1‑150 (MQ=255)                                                                                                                                                     tGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTACATTGCAGCGCTGTTCTACTTCGTGCCACGGGTCAAGGAGCGCTCGGTGGTGTCTTCGGACGCAc  >  1:288960/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                     CGCTGGCAAAACCATACCTATGTGCTCAAGCAGAGCCTGAACTTCTTTCAGAGCGACTTCGCCGGGCGTATTGCCCAGCGCATCATGCAGACCGGCAATTCGCTGCGCGATTCCGCCGTGCAGGCGGTGGACGCGCTATGGCATGTGCTGATCTACGCCATCACCTCGCTGGTGCTGTTCGCCGAGGCCGACTGGCGCCTGATGCTGCCGCTGCTGGCGTGGATCGTCAGCTACATTGCAGCGCTGTTCTACTTCGTGCCACGGGTCAAGGAGCGCTCGGTGGTGTCTTCGGACGCAC  >  NC_002947/5158307‑5158604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.