New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5492350 =	37 (0.850)	3 (0.070)	3/236	NT	8.8%	intergenic (‑103/+16)	PP_5716/cobJ	hypothetical protein/precorrin‑3B C17‑methyltransferase
	?	NC_002947	5492394 =	28 (0.700)					coding (1670/1698 nt)	cobJ	precorrin‑3B C17‑methyltransferase

TTGTCCGGCAGAACCTGAAGCTGCAGCTTCTCTTTATCGGTCGTCATGGGAAAGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTGG  >  NC_002947/5492201‑5492485                                                                                                                                                      |                                                                                                                                        cgtgacatcggtaggccggggcagacgctgaaggtagtcaccttggccgaactgctgccagaaatggtcgacatgcgcaccatggtgctggttggatcgtccactacctgcactttcgaccgcgcagctggcggggtttgggtctatacc                                                                                                                                         >  2:559082‑M1/150‑150 (MQ=255)    gacatcggtaggccggggcagacgctgaaggtagtcaccttggccgaactgctcattaatattgtcgacatgcgcaccatggtgctggttggatcgtccactacctgcactttcgaccgcgcagctggcagggtttgggtctatacCCcg                                                                                                                                      >  1:562050‑M1/147‑150 (MQ=255)           gAACCTGAAGCTGCAGCTTCTCTTTATCGGTCGTCATGGGAAAGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTTCCACGAAGCAGTTCCTCATCTGCCAGCACTgac                                                                                                                               >  1:8005/1‑148 (MQ=255)               cTGAAGCTGCAGCTTCTCTTTATCGGTCGTCATGGGAAAGGTCTCCAGGAAGGGTACGGTTGGAGCCGAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCAACGAAGCAGTTCCTCATCTGCCCGCGCTGcccccg                                                                                                                           >  2:113751/1‑150 (MQ=255)               cTGAAGCTGCAGCTTCTCTTTATCGGTCGTCATGGGAAAGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGccgccg                                                                                                                           >  1:297115/1‑150 (MQ=255)                       gCAGCTTCTCTTTATCGGTCGTCATGGGAAAGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGc                                                                                                                   >  2:777714/1‑150 (MQ=255)                           cTTCTCTTTATCGGTCGTCATGGGAAAGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTgc                                                                                                                                >  2:367193/1‑133 (MQ=255)                           cTTCTCTTTATCGGTCGTCATGGGAAAGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTgc                                                                                                                                <  1:367193/133‑1 (MQ=255)                            ttCTCTTTATCGGTCGTCATGGGAAAGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTgc                                                                                                              >  1:462576/1‑150 (MQ=255)                                ctTTATCGGTCGTCATGGGAAAGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCa                                                                                                          >  2:1103335/1‑150 (MQ=255)                                 tttATCGGTCGTCATGGGAAAGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCAt                                                                                                         >  1:867611/1‑150 (MQ=255)                                        gtcgtcATGGGAAAGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAgcg                                                                                                  >  2:298684/1‑150 (MQ=255)                                        gtcgtcATGGGAAAGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAgcg                                                                                                  >  1:507072/1‑150 (MQ=255)                                              aTGGGAAAGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAACCCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGt                                                                                            <  1:496987/150‑1 (MQ=255)                                                gggAAAGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGtat                                                                                          >  2:950114/1‑150 (MQ=255)                                                   aaaGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGa                                                                                       >  1:168231/1‑150 (MQ=255)                                                     aGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGAcc                                                                                     <  1:818079/150‑1 (MQ=255)                                                     aGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGAcc                                                                                     >  2:446310/1‑150 (MQ=255)                                                       ctgccagaaatggtcgacatgcgcaccatggtgctggttggatcgtccactacctgcactttcgaccgcgcagctggcggggtttgggtctatacCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCa                                                                                   >  1:1022911‑M1/96‑150 (MQ=255)                                                            agaaatggtcgacatgcgcaccatggtgctggttggatcgtccactacctgcactttcgaccgcgcagctggcggggtttgggtctatacCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGtat                                                                                          <  2:858659‑M1/48‑1 (MQ=255)                                                            agaaatggtcgacatgcgcaccatggtgctggttggatcgtccactacctgcactttcgaccgcgcagctggcggggtttgggtctatacCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGtat                                                                                          >  1:858659‑M1/91‑138 (MQ=255)                                                               gAANGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGc                                                                           >  2:703830/1‑150 (MQ=255)                                                                        ggTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCAGCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCAATACCAGCGCGGGGTATAGACCCAAGCCCCGCCAGCTgcgc                                                                  <  2:1079339/150‑1 (MQ=255)                                                                               gCCAAATAGCTCCAGCCGAAAACTTACCTGTGACCTTTTCTTGAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCTGCCAGCTGCGCGGTCGaa                                                           >  1:25181/1‑150 (MQ=255)                                                                                ccAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGaaa                                                          <  2:462576/150‑1 (MQ=255)                                                                                      aGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAg                                                    <  2:507072/150‑1 (MQ=255)                                                                                      aGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAg                                                    <  1:298684/150‑1 (MQ=255)                                                                                         tCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCCCCAGCTGCGCGGTCGAAAGTGCAGGTa                                                 >  2:910610/1‑150 (MQ=255)                                                                                              ccGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGa                                            <  1:96228/150‑1 (MQ=255)                                                                                              ccGAAAACCCANATGTCACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCGACGGGGGCTTACGAGATCACGCCATACCAGCGCGGGGTATANCCNCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGa                                            <  1:357042/150‑1 (MQ=255)                                                                                                  aaaCCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGAt                                        <  2:787277/150‑1 (MQ=255)                                                                                                       tacctGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCTGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAAc                                   <  2:25181/150‑1 (MQ=255)                                                                                                           tgtgACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGc                               <  1:1103335/150‑1 (MQ=255)                                                                                                                 ttttACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATg                         <  2:8005/149‑1 (MQ=255)                                                                                                                       cTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCTGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTgcgc                   >  1:421290/1‑150 (MQ=255)                                                                                                                          aaTCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGTGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATg                >  1:615932/1‑150 (MQ=255)                                                                                                                              tGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGa            <  1:777714/150‑1 (MQ=255)                                                                                                                                  aCGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATGCAACCAGCACCATGGTGCGCATGTCTACCAt        >  2:906654/1‑150 (MQ=255)                                                                                                                                    gAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCAttt      >  2:143340/1‑150 (MQ=255)                                                                                                                                        cAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTgg  <  2:615932/150‑1 (MQ=255)                                                                                                                                        cAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTgg  <  2:867611/150‑1 (MQ=255)                                                                                                                                        cAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGACATACCAGCGCGAGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGGGCGCATGTCGACCATTTCTgg  <  2:306845/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                        TTGTCCGGCAGAACCTGAAGCTGCAGCTTCTCTTTATCGGTCGTCATGGGAAAGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTGG  >  NC_002947/5492201‑5492485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.