New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 336937	48 (1.110)	4 (0.090)	4/248	NT	8.0%	coding (817/1206 nt)	PP_0279	hypothetical protein
	?	NC_002947	= 336967	45 (1.060)					coding (787/1206 nt)	PP_0279	hypothetical protein

CTCGAAGGGCTTCTCCAGCCAGGCCACCGGCAGGGAAGGTGTCGGCAGGTATTCATCGCTCTGGCGCTGCTGGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGTATTGCTGCGCGGCGATGCGGTTGTAGCAGCAGGGGGCTATGGCCAGTTGCCGGCAACCTTGCTGGC  >  NC_002947/336821‑337116                                                                                                                                                   |                                                                                                                                                       cTCGAAGGGCTTCTCCAGCCAGGCCACCGGCAGGGAAGGTGTCGGCAGGTATTCATCGCTCTGGCGCTGCTGGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTgac                                                                                                                                                     <  1:655930‑M2/150‑4 (MQ=255)  tCGAAGGGCTTCTCCAGCCAGGCCACCGGCAGGGAAGGTGTCGGCAGGTATTCATCGCTCTGGCGCTGCTGGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACg                                                                                                                                                    >  2:504177/1‑150 (MQ=255)     aaGGGCTTCTCCAGCCAGGCCACCGGCAGGGAAGGTGTCGGCAGGTATTCATCGCTCTGGCGCTGCTGGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGtt                                                                                                                                                 <  2:866577/150‑1 (MQ=255)        ggCTTCTCCAGCCAGGCCACCGGCAGGGAAGGTGTCGGCAGGTATTCATCGCTCTGGCGCTGCTGGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCa                                                                                                                                              <  1:121190/150‑1 (MQ=255)            tctcCAGCCAGGCCACCGGCAGGGAAGGTGTCGGCAGGTATTCATCGCTCTGGCGCTGCTGGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCCGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCa                                                                                                                                          >  2:112911/1‑150 (MQ=255)             ctcCAGCCAGGCCACCGGCAGGGAAGGTGTCGGCAGGTATTCATCGCTCTGGCGCTGCTGGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCaa                                                                                                                                         >  2:498126/1‑150 (MQ=255)              tcCAGCCAGGCCACCGGCAGGGAAGGTGTCGGCAGGTATTCATCGCTCTGGCGCTGCTGGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAg                                                                                                                                        <  2:37338/150‑1 (MQ=255)                            cGGCAGGGAATGTGTCGGCAGGTATTCATCGCTCTGGCGCTGCTGGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGgtc                                                                                                                          <  1:1059304/150‑1 (MQ=255)                            cGGCAGGGAAGGTGTCGGCAGGTATTCATCGCTCTGGCGCTGCTGGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCCGGCCCAGgtc                                                                                                                          >  2:456968/1‑150 (MQ=255)                                  ggAAGGTGTCGGCAGGTATTCATCGCTCTGGCGCTGCTGGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAg                                                                                                                    >  2:690032/1‑150 (MQ=255)                                   gAAGGTGTCGGCAGGTATTCATCGCTCTGGCGCTGCTGGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGc                                                                                                                   >  2:714249/1‑150 (MQ=255)                                     aGGTGTCGGCAGGTATTCATCGCTCTGGCGCTGCTGGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGa                                                                                                                 <  1:690032/150‑1 (MQ=255)                                          tCGGCAGGTATTCATCGCTCTGGCGCTGCTGGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCt                                                                                                            >  1:3484/1‑150 (MQ=255)                                                    ttCATCGCTCTGGCGCTGCTGGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGcgtcg                                                                                                  >  2:159405/1‑146 (MQ=255)                                                       aTCGCTCTGGCGCTGCTGGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCa                                                                                                                                    >  1:359294/1‑113 (MQ=255)                                                       aTCGCTCTGGCGCTGCTGGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCa                                                                                                                                    <  2:359294/113‑1 (MQ=255)                                                       aTCGCTCTGGCGCTGCTGGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGgt                                                                                                                           >  2:1032211/1‑122 (MQ=255)                                                       aTCGCTCTGGCGCTGCTGGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGgt                                                                                                                           <  1:1032211/122‑1 (MQ=255)                                                           ctctGGCGCTGCTGGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGCGTCGA‑GCCTgc                                                                                          <  1:159405/150‑1 (MQ=255)                                                                    tgctgGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAg                                                                                                              <  2:1084254/122‑1 (MQ=255)                                                                    tgctgGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAg                                                                                                              >  1:1084254/1‑122 (MQ=255)                                                                    tgctgGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCtgtg                                                                                 <  1:504177/150‑1 (MQ=255)                                                                      cgggCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGGGCTGGCGCCGCACGCGGGCGGCGGCAGTGACGGTTTCACTCAAGGGCAGGGCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGa                                                                               >  2:543998/3‑150 (MQ=255)                                                                              gcagcaGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGgtcgtc                                                                                                                       <  2:455086/103‑1 (MQ=255)                                                                              gcagcaGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGgtcgtc                                                                                                                       >  1:455086/1‑103 (MQ=255)                                                                                agcagGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTgg                                                                     >  2:756547/1‑150 (MQ=255)                                                                                 gcagGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGt                                                                    >  1:115112/1‑150 (MQ=255)                                                                                 gcagGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGt                                                                    >  1:995685/1‑150 (MQ=255)                                                                                  cagGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGTa                                                                   <  1:1030888/150‑1 (MQ=255)                                                                                        gAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGTATtgctg                                                             >  2:685004/1‑150 (MQ=255)                                                                                            cccAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGTATTGCTGcgcg                                                         >  1:275152/1‑150 (MQ=255)                                                                                             ccAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTg                                                                      <  1:940916/136‑1 (MQ=255)                                                                                             ccAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTg                                                                      >  2:940916/1‑136 (MQ=255)                                                                                             ccAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGTATTGCTGCgcgg                                                        >  1:572780/1‑150 (MQ=255)                                                                                              cAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCt                                                                                                            >  1:224653/1‑98 (MQ=255)                                                                                              cAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCt                                                                                                            <  2:224653/98‑1 (MQ=255)                                                                                                      gggCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGTATTGCTGCGCGGCGATGCGGt                                               <  2:995685/150‑1 (MQ=255)                                                                                                        gCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGgtcgtc                                                                                                                       <  1:125269/77‑1 (MQ=255)                                                                                                        gCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGgtcgtc                                                                                                                       >  2:125269/1‑77 (MQ=255)                                                                                                          cATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGTATTGCTGCGCGGCGATGCGGTTGTa                                           <  1:456968/150‑1 (MQ=255)                                                                                                            tCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGTATTGCTGCGCGGCGATGCGGTTGTagc                                         >  2:588632/1‑150 (MQ=255)                                                                                                            tCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGTATTGCTGCGCGGCGATGCGGTTGTagc                                         <  1:330312/150‑1 (MQ=255)                                                                                                              gAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTgacacctcgatggcccggcgcctgggcttcgacctgctgcaacgccagcagcgccagagcgatgaatac                                                                                   >  2:1001516‑M2/1‑38 (MQ=255)                                                                                                              gAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTgacacctcgatggcccggcgcctgggcttcgacctgctgcaacgccagcagcgccagagcgatgaatac                                                                                   <  1:1001516‑M2/107‑70 (MQ=255)                                                                                                               aGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGTATTGCTGCGCGGCGATGCGGTTGTagcagc                                      >  1:1126239/1‑150 (MQ=255)                                                                                                                    tCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTgacacctcgatggcccggcgcctgggcttcgacctgctgcaacgccagcagcgccagagcgatgaatacctgccga                                                                            <  2:324879‑M2/108‑77 (MQ=255)                                                                                                                    tCGCGCGGGCGCCGCACGCGGGCGCCGGCAGTgacacctcgatggcccggcgcctgggcttcgacctgctgcaacgccagcagcgccagagcgatgaatacctgccga                                                                            >  1:324879‑M2/1‑32 (MQ=255)                                                                                                                         cTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGTATTGCTGCGCGGCGATGCGGTTGTAGCAGCAGGGGGCTAt                            >  2:689323/1‑150 (MQ=255)                                                                                                                              gccgcACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGTATTGCTGCGCGGCGATGCGGTTGTAGCACCAGCGGGGTagaacta                       >  2:612726/1‑144 (MQ=255)                                                                                                                                   aCGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGTATTGCTGCGCGGCGATGCGGTTGTAGCAGCAGGGGGCTATGGCCAGTTGc                  <  1:498126/150‑1 (MQ=255)                                                                                                                                     gcgGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGTATTGCTGCGCGGCGATGCGGTTGTAGCAGCAGGGGGCTATGGCCAGTTGCCg                >  1:189353/1‑150 (MQ=255)                                                                                                                                             cGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGTATTGCTGCGCGGCGATGCGGTTGTAGCAGCAGGGGGCTATGGCCAGTTGCCGGCAACCtt        >  1:16686/1‑150 (MQ=255)                                                                                                                                                  gTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCATGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGTATTGCTGCGCGGCGATGGGGTTGTAGCAACAGGGGGCTATGGCCAGTTGCCGGCAACCTTgctgg   <  2:572780/150‑1 (MQ=255)                                                                                                                                                   tGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGTATTGCTGCGCGGCGATGCGGTTGTAGCAGCAGGGGGCTATGGCCAGTTGCCGGCAACCTTgctggc  <  1:756547/150‑1 (MQ=255)                                                                                                                                                   tGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGTATTGCTGCGCGGCGATGCGGTTGTAGCAGCAGGGGGCTATGGCCAGTTGCCGGCAACCTTgct     <  2:932757/147‑1 (MQ=255)                                                                                                                                                   tGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGTATTGCTGCGCGGCGATGCGGTTGTAGCAGCAGGGGGCTATGGCCAGTTGCCGGCAACCTTgct     >  1:932757/1‑147 (MQ=255)                                                                                                                                                   |                                                                                                                                                       CTCGAAGGGCTTCTCCAGCCAGGCCACCGGCAGGGAAGGTGTCGGCAGGTATTCATCGCTCTGGCGCTGCTGGCGTTGCAGCAGGTCGAAGCCCAGGCGCCGGGCCATCGAGGTGTCGCGCTGGCGCCGCACGCGGGCGCCGGCAGTGACGGTTTCACTCAAGGGCAGGCCCAGGTCGTCCAGCGACAGCTGCAGGC‑TCGACGCCTGCGCGGCTGTGGATAACGCCTGGTATTGCTGCGCGGCGATGCGGTTGTAGCAGCAGGGGGCTATGGCCAGTTGCCGGCAACCTTGCTGGC  >  NC_002947/336821‑337116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.