New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 497685	55 (1.270)	4 (0.100)	4/244	NT	7.9%	coding (1554/2388 nt)	PP_0409	two‑component system sensor histidine kinase
	?	NC_002947	= 497738	41 (0.990)					coding (1607/2388 nt)	PP_0409	two‑component system sensor histidine kinase

GCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTGC  >  NC_002947/497590‑497887                                                                                                                                                      |                                                                                                                                                      gCTNTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTc                                                                                                                                                      <  2:697205‑M2/150‑2 (MQ=255)       gtggGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCgg                                                                                                                                                <  1:1062915/150‑1 (MQ=255)       gtggGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCgg                                                                                                                                                >  1:627205/1‑150 (MQ=255)         gggTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCa                                                                                                                                              >  1:940742/1‑150 (MQ=255)          ggTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAg                                                                                                                                             <  2:760334/150‑1 (MQ=255)            gtATGCACCCGGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAGCCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAggg                                                                                                                                           >  2:227926/2‑150 (MQ=255)                gCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGaa                                                                                                                                       <  1:449161/150‑1 (MQ=255)                 cACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAAc                                                                                                                                      >  2:645231/1‑150 (MQ=255)                 cACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAAc                                                                                                                                      <  1:752680/150‑1 (MQ=255)                  aCCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACa                                                                                                                                     <  1:732793/150‑1 (MQ=255)                       gCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCt                                                                                                                                >  2:994347/1‑150 (MQ=255)                            aTCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGct                                                                                                                           <  2:754661/150‑2 (MQ=255)                              ccAGTACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCGGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGa                                                                                                                         <  2:450008/150‑1 (MQ=255)                              ccAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGAACCGTGATAATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGa                                                                                                                         >  1:923063/1‑150 (MQ=255)                                 gCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGatat                                                                                                                      >  2:834817/1‑150 (MQ=255)                                  cACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCCGAGGAGCA‑CCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATc                                                                                                                     >  1:1096103/1‑150 (MQ=255)                                    cccGCAGATGGACCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTCTCACAGGGTGCAGGACCTGTCCGTGGCCAGCGACCAGGACTGCTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCaa                                                                                                                   <  2:584586/150‑1 (MQ=255)                                           aTGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAgc                                                                                                            >  1:1052105/1‑150 (MQ=255)                                                   gcgcAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCa                                                                                                              <  1:567660/140‑1 (MQ=255)                                                   gcgcAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCa                                                                                                              >  2:567660/1‑140 (MQ=255)                                                        aCCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTgg                                                                                               <  1:123930/150‑1 (MQ=255)                                                           tGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCa                                                                                            >  1:39744/1‑150 (MQ=255)                                                             gTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAAc                                                                                          <  1:834817/150‑1 (MQ=255)                                                              tGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCG‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACg                                                                                         <  1:507719/150‑1 (MQ=255)                                                                   cccGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAg                                                                                    >  1:665311/1‑150 (MQ=255)                                                                           ccGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGtgtg                                                                            >  1:517168/1‑150 (MQ=255)                                                                            cGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTgg                                                                           >  1:787994/1‑150 (MQ=255)                                                                              tGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGa                                                                         >  1:122451/1‑150 (MQ=255)                                                                              tGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGa                                                                         <  1:722900/150‑1 (MQ=255)                                                                                  gATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGgt                                                                     <  2:627205/150‑1 (MQ=255)                                                                                  gATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGgt                                                                     <  1:994347/150‑1 (MQ=255)                                                                                  gATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGgt                                                                     >  2:322301/1‑150 (MQ=255)                                                                                     tATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTa                                                                  >  1:220354/1‑150 (MQ=255)                                                                                       tCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTcaccctgtgataatcagcacggtcctcggggtgcaccaggttgcgcaggcccatctgcgggtgctggatctcgctgggtgcataacc                                                                <  1:923502‑M2/150‑88 (MQ=255)                                                                                       tCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGt                                                                >  1:1090964/1‑150 (MQ=255)                                                                                         acaGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCt                                                              <  2:122451/150‑1 (MQ=255)                                                                                           aGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTgg                                                            <  2:1097409/150‑1 (MQ=255)                                                                                                 cAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTTGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATc                                                      <  1:227926/150‑1 (MQ=255)                                                                                                    gACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGCAGTCTGGGACATcaca                                                   >  2:410495/1‑150 (MQ=255)                                                                                                      cctggccctggcCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTa                                                                  >  2:661456/1‑133 (MQ=255)                                                                                                      cctggccctggcCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTa                                                                  <  1:661456/133‑1 (MQ=255)                                                                                                       ctggccctggccAGCGACCAGGACTGGTGCTGGCAGGGGCAAGGTCCTgcaccctgggataatcagcacggtcctcggggtgcaccaggttgcgcaggcccatctgcgggtgctggatctcgctgggtgcataacccaccaaagcctcgc                                                 <  1:445630‑M2/150‑103 (MQ=255)                                                                                                        tggcccttcctAGCGACCAGTTATGGTACTGGCAGTTCCGCA‑CAATGACCCAGCAGGGTGTACTGCGCTGGGCCCATACCAAGGCCCGCGCCCGGCATCTGGGCAACGTCCAAGTAGTGTAGGACGGTGTAGCCTAGGACATcacacaag                                               <  2:548406/150‑3 (MQ=255)                                                                                                        tggccctggccAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTcaccctgtgataatcagcacggtcctcggggtgcaccaggttgcgcaggcccatctgcgggtgctggatctc                                                                               <  2:781530‑M2/118‑73 (MQ=255)                                                                                                        tggccctggccAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTcaccctgtgataatcagcacggtcctcggggtgcaccaggttgcgcaggcccatctgcgggtgctggatctc                                                                               >  1:781530‑M2/1‑46 (MQ=255)                                                                                                          gccctggccAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGTGc                                             <  1:322301/150‑1 (MQ=255)                                                                                                                            gACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAgctggcg                           >  1:926545/1‑150 (MQ=255)                                                                                                                                ggTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAgctggcgctgg                       <  1:645231/150‑1 (MQ=255)                                                                                                                                        cAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTcc               <  2:39744/150‑1 (MQ=255)                                                                                                                                             gcgcA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGa          >  2:913423/1‑150 (MQ=255)                                                                                                                                                 a‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGagcag      <  1:725257/150‑1 (MQ=255)                                                                                                                                                 a‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGagcag      <  2:1052105/150‑1 (MQ=255)                                                                                                                                                     cTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTg   >  1:913093/1‑150 (MQ=255)                                                                                                                                                      tCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCt                                                                                                 >  1:1061882/1‑55 (MQ=255)                                                                                                                                                      tCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCt                                                                                                 <  2:1061882/55‑1 (MQ=255)                                                                                                                                                      tCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTgc  <  2:940742/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      GCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTCCTGGCAGGGGCGCA‑TCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGAAGTCCCAGGAGCAGCTGC  >  NC_002947/497590‑497887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.