New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 660887	27 (0.620)	4 (0.100)	4/236	NT	11.4%	intergenic (+16/‑151)	speA/PP_0568	biosynthetic arginine decarboxylase/hypothetical protein
	?	NC_002947	= 660913	37 (0.920)					intergenic (+42/‑125)	speA/PP_0568	biosynthetic arginine decarboxylase/hypothetical protein

CATTACCGCGACAAGGTTGCCAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGAGGACGATATGCAACGTCCAGGCTCCC  >  NC_002947/660764‑661056                                                                                                                                                      |                                                                                                                                                gaTTACCGCGACAAGGTTGCCAGCGCCAAGATCAATGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTtgtg                                                                                                                                                 <  2:181843/149‑1 (MQ=255)         cgACAAGGTTGCCAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGggagcggc                                                                                                                                         >  2:251290‑M2/1‑142 (MQ=255)             aaGGTTGCCAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTg                                                                                                                                     >  2:1129502/1‑150 (MQ=255)                       gcgcCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGata                                                                                                                           <  2:355330/150‑1 (MQ=255)                             aGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAggg                                                                                                                     <  1:1042840/150‑1 (MQ=255)                                    tGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGcc                                                                                                              >  2:253905/1‑150 (MQ=255)                                       gcgTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCTTCGCGATATGAGGGCGAAGCCCTc                                                                                                           >  1:802427/1‑150 (MQ=255)                                                 aCCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGGGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTca                                                                                                 >  1:229303/1‑150 (MQ=255)                                                       tATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCg                                                                                           <  2:921986/150‑1 (MQ=255)                                                                 ccTTGCTCCTGGCCTTGACCCCGCCCTCCCAACCGTTGTCATAATTGTCGTGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATCTGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATcc                                                                                 <  2:738051/150‑1 (MQ=255)                                                                  cTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCg                                                                                >  2:764047/1‑150 (MQ=255)                                                                   ttGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCgg                                                                               >  2:1078667/1‑150 (MQ=255)                                                                               ttGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATc                                                                   <  1:344735/150‑1 (MQ=255)                                                                                       gTCTTCGTACCTGTCGTCGTAATTGACGGGGGCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAAt                                                           <  1:672898/150‑1 (MQ=255)                                                                                          ttCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGcc                                                        <  1:253905/150‑1 (MQ=255)                                                                                                  tGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGGGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCtt                                                <  2:229303/150‑1 (MQ=255)                                                                                                    tcgtcgTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATCTGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGACCTGGTCCATCGCACCAATGCCGCTACCTTTg                                              >  2:176203/1‑150 (MQ=255)                                                                                                    tcgtcgTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTg                                              >  1:640866/1‑150 (MQ=255)                                                                                                      gtcgtAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGaa                                            <  1:164087/150‑1 (MQ=255)                                                                                                           aaTTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCaa                                       <  2:226064/150‑1 (MQ=255)                                                                                                           aaTTGACGCGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGTGAGCCGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCCGCGTCACAACCCGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCaa                                       <  2:539663/150‑1 (MQ=255)                                                                                                             ttGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCTCACCAATGCCGCTACCTTTGAATGCAATg                                     <  1:1019489/150‑1 (MQ=255)                                                                                                             ttGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATg                                     <  1:1129502/150‑1 (MQ=255)                                                                                                                 cGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGggagcggccccgtcaattacgacgacaggtacgaagaccgggtcaagcccaggcgcaaggcatccagatactgggtccgctcacgcgcagtgatcttggcgctggcaacctt                                 <  2:33221‑M2/150‑113 (MQ=255)                                                                                                                   gggCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCaaa                               <  1:969381/150‑1 (MQ=255)                                                                                                                        gCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAaggagg                          <  1:764047/150‑1 (MQ=255)                                                                                                                          tCCTGCAAAAGCCTGTGCTGCCTTTTGTGggagcggccccgtcaattacgacgacaggtacgaagaccgggtcaagcccaggcgcaaggcatccagatactgg                                                                       <  2:613689‑M2/103‑75 (MQ=255)                                                                                                                          tCCTGCAAAAGCCTGTGCTGCCTTTTGTGggagcggccccgtcaattacgacgacaggtacgaagaccgggtcaagcccaggcgcaaggcatccagatactgg                                                                       >  1:613689‑M2/1‑29 (MQ=255)                                                                                                                            cTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTg                                                                          >  2:254032/1‑98 (MQ=255)                                                                                                                            cTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTg                                                                          <  1:254032/98‑1 (MQ=255)                                                                                                                               cAAAAGCCTGTGCTGCCTTTTGTGggagcggccccgtcaattacgacgacaggtacgaagaccgggtcaagcccaggcgcaaggcatccagatactgggtccgctcacgcgcagtgatcttggcgctggcaaccttgtcgcggtaatgcg                   >  1:33221‑M2/1‑24 (MQ=255)                                                                                                                                aaaaGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTGAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGAGGACGATATg                  >  2:1113277/1‑150 (MQ=255)                                                                                                                                aaaaGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCaaa                               >  1:812778/1‑137 (MQ=255)                                                                                                                                aaaaGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCaaa                               <  2:812778/137‑1 (MQ=255)                                                                                                                                  aaGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTaaa                                                                                      >  2:1084075/1‑80 (MQ=255)                                                                                                                                  aaGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTaaa                                                                                      <  1:1084075/80‑1 (MQ=255)                                                                                                                                    gCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGAGGACGATATGCAAc              >  2:809832/1‑150 (MQ=255)                                                                                                                                          gctgcCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGAGGACGATATGCAACGTCCAg        <  1:1078667/150‑1 (MQ=255)                                                                                                                                           ctgcCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGAGGACGATATGCAACGTCCAgg       >  1:117383/1‑150 (MQ=255)                                                                                                                                              ccTTTTGTGGGAGCGGCCTTGCTTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGAGGACGATATGCAACGTCCAGGCTc    <  2:802427/150‑1 (MQ=255)                                                                                                                                              ccTTTTGTGGGAGCGGCCTTGCGTCGCTATATTAATGCGAAGCCCTCACCAGCGTCACAGCCGGTAAATATCCGGCTCTTCTCCACTGGACCAATGCCGCGACCTTTGAATGCAAGGTTCAAAGGAGGACTATATGCAACGTCCAGGCTc    <  2:231459/150‑1 (MQ=255)                                                                                                                                                ttttGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGc                                                                                                               >  1:3728/1‑41 (MQ=255)                                                                                                                                                ttttGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGc                                                                                                               <  2:3728/41‑1 (MQ=255)                                                                                                                                                ttttGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGAGGACGATATGCAACGTCCAGGCTccc  >  1:1010791/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                CATTACCGCGACAAGGTTGCCAGCGCCAAGATCACTGCGCGTGAGCGGACCCAGTATCTGGATGCCTTGCGCCTGGGCTTGACCCGGTCTTCGTACCTGTCGTCGTAATTGACGGGGCCGCTCCTGCAAAAGCCTGTGCTGCCTTTTGTGGGAGCGGCCTTGCGTCGCGATATGAGGGCGAAGCCCTCACCAGCGTCACAACCGGTAAATATCCGGCCCTGGTCCATCGCACCAATGCCGCTACCTTTGAATGCAATGTTCAAAGGAGGACGATATGCAACGTCCAGGCTCCC  >  NC_002947/660764‑661056

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.