New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1167320 =	65 (1.500)	4 (0.100)	4/246	NT	6.9%	coding (258/729 nt)	pgl	6‑phosphogluconolactonase
	?	NC_002947	1167370 =	45 (1.070)					coding (308/729 nt)	pgl	6‑phosphogluconolactonase

GTCTGGCGGCCGCAGCCCGGTGCCGTTCCTGGAGAAACTGGCCAGCGAGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGCTGACCAGGCCTTGGCCGAGCTACCGCCGATCGACGTGCTGGTGCTGGGCATGGG  >  NC_002947/1167224‑1167505                                                                                                                                                   |                                                                                                                                        gtCTGGCGGCCGCAGCCCGGTGCCGTTCCTGGAGAAACTGGCCAGCGAGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGtt                                                                                                                                      <  2:649473/150‑1 (MQ=255)       cggcCGCAGCCCGGTGCCGTTCCTGGAGAAACTGGCCAGCGAGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAggg                                                                                                                                <  1:242378/150‑1 (MQ=255)          ccGCAGCCCGGTGCCGTTCCTGGAGAAACTGGCCAGCGAGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGa                                                                                                                             >  1:67259/1‑150 (MQ=255)               gCCCGGTGCCGTTCCTGGAGAAACTGGCCAGCGAGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCgg                                                                                                                        <  1:864267/150‑1 (MQ=255)                  cGGTGCCGTTCCTGGAGGATCTGGCCAGCGAGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCa                                                                                                                     >  1:641589/1‑150 (MQ=255)                       ccGTTCCTGGAGAAACTGGCCAGCGAGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGcc                                                                                                                >  1:1046343/1‑150 (MQ=255)                             cTGGAGAAACTGGCCAGCGAGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTc                                                                                                          <  1:116740/150‑1 (MQ=255)                                gagaAACTGGCCAGCGAGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGtt                                                                                                       <  1:1073762/150‑1 (MQ=255)                                gagaAACTGGCCAGCGAGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGtt                                                                                                       <  1:419825/150‑1 (MQ=255)                                gagaAACTGGCCAGCGAGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGtt                                                                                                       >  2:517868/1‑150 (MQ=255)                                gagaAACTGGCCAGCGAGCACCTGGACTGGGCCAAGACCAGTGTCAGCGAGGCGGAGGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGtt                                                                                                       >  1:749174/1‑150 (MQ=255)                                 agaAACTGGCCAGCGAGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTg                                                                                                      <  1:90582/150‑1 (MQ=255)                                     aCTGGCCAGCGAGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGtt                                                                                                                                      <  1:1051873/114‑1 (MQ=255)                                     aCTGGCCAGCGAGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGtt                                                                                                                                      >  2:1051873/1‑114 (MQ=255)                                     aCTGGCCAGCGAGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGcat                                                                                                  <  2:754279/150‑3 (MQ=255)                                      cTGGCCAGCGAGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAACGGCGAAGCGGCCAAGGACCGTTTCGTTGGCCTg                                                                                                 >  2:458933/1‑150 (MQ=255)                                        ggCCAGCGAGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTa                                                                                               <  2:948102/150‑1 (MQ=255)                                         gCCAGCGAGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTAc                                                                                              <  2:81648/150‑1 (MQ=255)                                           cAGCGAGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACca                                                                                            <  1:895454/150‑1 (MQ=255)                                             gCGAGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACcagc                                                                                          <  2:809777/150‑1 (MQ=255)                                                aGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAgg                                                                                       >  2:230638/1‑150 (MQ=255)                                                aGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAgg                                                                                       <  2:749174/150‑1 (MQ=255)                                                       ggACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGaa                                                                                >  1:147850/1‑150 (MQ=255)                                                           tGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCtt                                                                            >  2:48301/1‑150 (MQ=255)                                                            gggCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTg                                                                           <  2:67259/150‑1 (MQ=255)                                                             ggCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGa                                                                          <  2:1109010/150‑1 (MQ=255)                                                             ggCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGCAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGa                                                                          <  1:799314/150‑1 (MQ=255)                                                                         tGTCAGCCTGGCTGACGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCt                                                              >  1:948028/1‑150 (MQ=255)                                                                          gTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTc                                                             >  2:984656/1‑150 (MQ=255)                                                                              gccgcttcgcccttcaacaGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCt                                                                                                                                         >  1:179459‑M1/20‑70 (MQ=255)                                                                              gccgcttcgcccttcaacaGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCt                                                                                                                                         <  2:179459‑M1/51‑1 (MQ=255)                                                                               ccTNGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGc                                                        >  2:700288/1‑150 (MQ=255)                                                                                 tGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGCTg                                                      >  1:529440/1‑150 (MQ=255)                                                                                  ggCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGCTGa                                                     <  2:529440/150‑1 (MQ=255)                                                                                   gCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGCTGAc                                                    >  1:377370/1‑150 (MQ=255)                                                                                     tgatgaGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGc                                                                                                                       <  1:981681/81‑1 (MQ=255)                                                                                     tgatgaGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGc                                                                                                                       >  2:981681/1‑81 (MQ=255)                                                                                     tgatgaGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTg                                                                                                      <  1:899616/98‑1 (MQ=255)                                                                                     tgatgaGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTg                                                                                                      >  2:899616/1‑98 (MQ=255)                                                                                                aggtgacgggccagcaggccggcattgctgtcggcgtgctccaccggcaccTGTTGAAGGGCGAAGCGGc                                                                                                                       <  2:179459‑M2/19‑1 (MQ=255)                                                                                                aggtgacgggccagcaggccggcattgctgtcggcgtgctccaccggcaccTGTTGAAGGGCGAAGCGGc                                                                                                                       >  1:179459‑M2/52‑70 (MQ=255)                                                                                                 GGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGCTGACCAGGCCTTGGCCGa                                      >  2:147850‑M1/1‑150 (MQ=255)                                                                                                  gtgacgggccagcaggccggcattgctgtcggcgtgctccaccggcaccTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGCTGACCAGGCCTTGGCCGa                                      >  1:812497‑M2/50‑149 (MQ=255)                                                                                                  gtgacgggccagcaggccggcattgctgtcggcgtgctccaccggcaccTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGCTGACCAGGCCTTGGCCGa                                      <  2:812497‑M2/100‑1 (MQ=255)                                                                                                  GTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGCTGACCAGGCCTTGGCCGAg                                     <  1:363303‑M1/150‑1 (MQ=255)                                                                                                       ggTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGCTGACCAGGCCTTGGCCGCGCTAcc                                >  1:430705/1‑150 (MQ=255)                                                                                                       ggTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGCTGACCAGGCCTTGGCCGAGCTAcc                                >  1:3672/1‑150 (MQ=255)                                                                                                                    gACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGCTGACCAGGCCTTGGCCGAGCTACCGCCGATCGACgtg                   >  2:958389/1‑150 (MQ=255)                                                                                                                     aCAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGCTGACCAGGCCTTGGCCGAGCTACCGCCGATCGACgtgc                  <  2:948028/150‑1 (MQ=255)                                                                                                                         cAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCg                                                                                     <  2:873254/79‑1 (MQ=255)                                                                                                                         cAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCg                                                                                     >  1:873254/1‑79 (MQ=255)                                                                                                                           aTGCCGGCCTGCTGGCCCGTCACCTCTCTCGTGTCGAAGCGGCCAAGGCCCGTTTCGTTGGACTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGCTGACCAGGCCTTGGCCGAGCTACCGCCGATCGACgtgctggttc            >  1:29983/1‑148 (MQ=255)                                                                                                                                   ctgctgGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCACAGCTGACCAGGCCTTGGCCGAGCTACCGCCGAGCGACGTGCTGTTGCTGGGCATg    >  2:57527/1‑150 (MQ=255)                                                                                                                                    tgctgGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGCTGACCAGGCCTTGGCCGAGCTACCGCCGATCGACGTGCTGGTGCTGGGCATgg   >  1:275179/1‑150 (MQ=255)                                                                                                                                    tgctgGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGCTGACCAGGCCTTGGCCGAGCTACCGCCGATCGACGTGCTGGTGCTGGGCATgg   >  1:275181/1‑150 (MQ=255)                                                                                                                                     gctgGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGCTGACCAGGCCTTGGCCGAGCTACCGCCGATCGACGTGCTGGTGCTGGGCATggg  <  1:230638/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                        GTCTGGCGGCCGCAGCCCGGTGCCGTTCCTGGAGAAACTGGCCAGCGAGCACCTGGACTGGGCCAAGGTCACTGTCAGCCTGGCTGATGAGCGCTGGGTGCCGGTGGAGCACGCCGACAGCAATGCCGGCCTGCTGGCCCGTCACCTGTTGAAGGGCGAAGCGGCCAAGGCCCGTTTCGTTGGCCTGTACCAGCAGGCGGAGAACCTTGATGCAGCTGCGCTCAAAGCTGACCAGGCCTTGGCCGAGCTACCGCCGATCGACGTGCTGGTGCTGGGCATGGG  >  NC_002947/1167224‑1167505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.