New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1885135	74 (1.710)	3 (0.070)	3/244	NT	4.6%	intergenic (+56/‑241)	PP_1692/rmuC	hypothetical protein/DNA recombination limiting inversions protein
	?	NC_002947	5756575 =	53 (1.270)					intergenic (+196/‑492)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase
Rejected: Frequency below/above cutoff threshold.

CCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAA  >  NC_002947/5756438‑5756724                                                                                                                                          |                                                                                                                                                      ccGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCgg                                                                                                                                           <  1:381682/150‑1 (MQ=255)        cacaGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAAcc                                                                                                                                    >  1:362203/1‑150 (MQ=255)                   ctctGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGGCACCACCATATTCGCGGTTAAACCCGCGCCTACCa                                                                                                                         >  2:289316/1‑150 (MQ=255)                    tctGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCAc                                                                                                                        >  1:1100654/1‑150 (MQ=255)                       gCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCAcggc                                                                                                                     <  1:1084036/150‑1 (MQ=255)                        tggccAAGGCTGATGCGGTGGACCCACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGACTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCAcggcg                                                                                                                    <  1:79866/147‑1 (MQ=255)                          cccAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTcgcg                                                                                                                                            <  1:106639/124‑1 (MQ=255)                          cccAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTcgcg                                                                                                                                            >  2:106639/1‑124 (MQ=255)                           ccAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTg                                                                                                                 <  2:437839/150‑1 (MQ=255)                           agggcaggggtcgcaggaagcgcggcgcttgttgcgacagtggttttctgtctgagcttttttgcctgcacgggccctttcgcgagcaatcaccgatgtgtgtccaccgccACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTg                                                                                                                 <  2:579976‑M2/39‑1 (MQ=255)                             caGGCTGATGCGGTGAACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTggg                                                                                                               <  2:77927/149‑1 (MQ=255)                              gcaggggtcgcaggaagcgcggcgcttgttgcgacagtggttttctgtctgagcttttttgcctgcacgggccctttcgcgagcaatcaccgatgtgtgtccaccgccACCGTATTCGCGGGTAAACCCGCGCCTACCAcggcgg                                                                                                                   <  1:898286‑M2/37‑1 (MQ=255)                              gcaggggtcgcaggaagcgcggcgcttgttgcgacagtggttttctgtctgagcttttttgcctgcacgggccctttcgcgagcaatcaccgatgtgtgtccaccgccACCGTATTCGCGGGTAAACCCGCGCCTACCAcggcgg                                                                                                                   >  2:898286‑M2/109‑145 (MQ=255)                                       cGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCgg                                                                                                     <  1:552867/150‑1 (MQ=255)                                        ggTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCTCGCCTACCACGGCGGTGGGCACATATCggg                                                                                                    <  2:393862/150‑1 (MQ=255)                                          tGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGgt                                                                                                  <  2:164674/150‑1 (MQ=255)                                           ggACACACATCGCGGTCGTCGTAGGAGCGGGTCCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGgtc                                                                                                 <  2:819387/150‑1 (MQ=255)                                            gACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGTGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGgtcg                                                                                                <  1:289316/150‑1 (MQ=255)                                             acacacATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGgtcgt                                                                                               <  1:544193/150‑1 (MQ=255)                                                      gcgGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCATATTACGGCGGGGGGCACATATCGGGGTCGTCGTAGGAgg                                                                                      >  1:504583/1‑149 (MQ=255)                                                          tcgtcgTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGt                                                                                  >  2:97202/1‑150 (MQ=255)                                                              cgtAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCAc                                                                              <  2:306388/150‑1 (MQ=255)                                                                  ttcgCGGGTGAACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAg                                                                                          >  2:321855/4‑134 (MQ=255)                                                                  ttcgCGGGTGAACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAg                                                                                          <  1:321855/131‑1 (MQ=255)                                                                     gCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCgg                                                                                                                                           >  2:367940/1‑82 (MQ=255)                                                                         gTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTg                                                                                                                 <  1:104296/104‑1 (MQ=255)                                                                         gTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTg                                                                                                                 >  2:104296/1‑104 (MQ=255)                                                                               ccGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCgcgc                                                             >  1:681814/1‑150 (MQ=255)                                                                                 gcgAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCct                                                           >  1:985369/1‑150 (MQ=255)                                                                                      gagGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCgg                                                                                    <  2:499618/120‑1 (MQ=255)                                                                                      gagGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCgg                                                                                    >  1:499618/1‑120 (MQ=255)                                                                                      gagGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGAGATAGGCAAATATCGGGGTCTTGGGAGGAGCTGTGTCTCCGGCGGTGGGGCCGCGCCTGATgg                                                      >  2:456800/1‑150 (MQ=17)                                                                                      gagGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTGGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTgg                                                      <  1:456800/150‑1 (MQ=255)                                                                                                ctgctgGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCa                                            <  1:97202/150‑1 (MQ=255)                                                                                                ctgctgGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCa                                            <  2:1100654/150‑1 (MQ=255)                                                                                                ctgctgGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCAGAGAAGATGCCGCGCCTGCTGGCCAATCTCCa                                            >  1:280589/1‑150 (MQ=255)                                                                                                      gCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGACAATCTTCTGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGcc                                      >  1:69562/1‑150 (MQ=14)                                                                                                      gCCAATCTCCACCTGCCGTTCACCGTTAATGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGcc                                      >  1:309469/1‑150 (MQ=255)                                                                                                       ccAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCACCACATgaca                                     >  2:396851/1‑147 (MQ=255)                                                                                                        cAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGt                                    >  1:383064/1‑150 (MQ=255)                                                                                                           tctcCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCTCGCCTACCACGGCGGTGGGca                                                                                                             >  1:250361/1‑74 (MQ=255)                                                                                                           tctcCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCTCGCCTACCACGGCGGTGGGca                                                                                                             <  2:250361/74‑1 (MQ=255)                                                                                                                aCCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGtt                            <  2:985369/150‑1 (MQ=255)                                                                                                                aCCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGGGGGCCCATATCGGGGTCGTCGTAGGAGCGGGATCACACGCGAAGAGTCCGCGCCTGCTGACTAATCACCACCTGCCGTTCAGCGtt                            >  1:1058026/1‑150 (MQ=17)                                                                                                                  cTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTgc                          >  2:197510/1‑150 (MQ=255)                                                                                                                   tGCCGTTCCCCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATc                                                                                                       <  2:618571/72‑1 (MQ=255)                                                                                                                   tGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATc                                                                                                       >  1:618571/1‑72 (MQ=255)                                                                                                                           aCCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCctgct                                                        <  2:216125/111‑1 (MQ=255)                                                                                                                           aCCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCctgct                                                        >  1:216125/1‑111 (MQ=255)                                                                                                                           aCCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTgccgcc                      <  2:356877/145‑1 (MQ=255)                                                                                                                           aCCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTgccgcc                      >  1:356877/1‑145 (MQ=255)                                                                                                                            ccGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCctgct                                                        >  2:1094366/1‑110 (MQ=255)                                                                                                                            ccGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCctgct                                                        <  1:1094366/110‑1 (MQ=255)                                                                                                                             cGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGaa                                                                       <  1:180785/94‑1 (MQ=255)                                                                                                                             cGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGaa                                                                       >  2:180785/1‑94 (MQ=255)                                                                                                                             cGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCg               >  2:508093/1‑150 (MQ=255)                                                                                                                                  ctgcCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGc                                                     >  1:652702/1‑107 (MQ=255)                                                                                                                                  ctgcCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGc                                                     <  2:652702/107‑1 (MQ=255)                                                                                                                                     ccgccACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTcgcg       >  2:485310‑M2/6‑150 (MQ=255)                                                                                                                                         cACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTa   >  1:127459‑M2/2‑150 (MQ=255)                                                                                                                                          aCCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTaa  >  1:816295/1‑150 (MQ=255)                                                                                                                                          |                                                                                                                                                      CCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCACCGTTGCTGCCGCCACCGTATTCGCGGGTAAACCCGCGCCTACCACGGCGGTGGGCACATATCGGGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCGCCACCGTATTCGCGGGTAA  >  NC_002947/5756438‑5756724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.