| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2003635 | 19 (0.440) | 3 (0.070) | 3/242 | NT | 13.9% | coding (93/1011 nt) | PP_1787 | hypothetical protein |
| ? | NC_002947 | = 2003657 | 19 (0.460) | coding (115/1011 nt) | PP_1787 | hypothetical protein | |||||
AGATGGCGATGCAGTAGGAAGGAAGCTTATAAAATGAAAGTTACAAATATAGGGCTGTCCTCAGTCGTGATTGAATTTGCGAGCGTCAATGCTTCCAAATTTATAAATCTTAGCCAGGCGCAGCGTGAGGTGCCATTCAAATGGGTGAACGCTGGCGATC‑‑CTCAGCAGGTAGCCATTGAGGTCAATATCAGAGATTTTTCGGTCTATGAAAGTTTGCTACTGACTTCTGACGAGCATGAGTTGGAGCTAGCCGGAGCCTTCGAAAAATTTAGGCTGGATGAAAAAAA > NC_002947/2003510‑2003796 | aGATGGCGATGCAGTAGGAAGGAAGCTTATAAAATGAAAGTTACAAATATAGGGCTGTCCTCAGTCGTGATTGAATTTGCGAGCGTCAATGCTTCCAAATTTATAAATCTTAGCCAGGCGCAGCGTGAGGTGCCATTCAAATGGGTGAac > 2:292114‑M2/1‑148 (MQ=255)aGATGGCGATGCAGTAGGAAGGAAGCTTATAAAATGAAAGTTACAAATATAGGGCTGTCCTCAGTCGTGATTGAATTTGCGAGCGTCAATGCTTCCAAATTTATAAATCTTAGCCAGGCGCAGCGTGAGGTGCCATTCAAATGGGTGAac < 1:654723‑M2/150‑3 (MQ=255) gaaggaagCTTATAAAATGAAAGTTACAAATATAGGGCTGTCCTCAGTCGTGATTGAATTTGCGAGCGTCAATGCTTCCAAATTTATAAATCTTAGCCAGGCGCAGCGTGAGGTGCCATTCAAATGGGTGAACGCTGGCGATC‑‑CTcagca > 2:894071/1‑150 (MQ=255) taAAATGAAAGTTACAAATATAGGGCTGTCCTCAGTCGTGATTGAATTTGCGAGCGTCAATGCTTCCAAATTTATAAATCTTAGCCAGGCGCAGCGTGAGGTGCCATTCAAATGGGTGAACGCTGGCGATC‑‑CTCAGCAGGTAGCCATTGa < 1:1072594/150‑1 (MQ=255) aaaaTGAAAGTTACAAATATAGGGCTGTCCTCAGTCGTGATTGAATTTGCGAGCGTCAATGCTTCCAAATTTATAAATCTTAGCCAGGCGCAGCGTGAGGTGCCATTCAAATGGGTGAACGCTGGCGATC‑‑CTCAGCAGGTAGCCATTGAg < 2:582278/150‑1 (MQ=255) aaaaTGAAAGTTACAAATATAGGGCTGTCCTCAGTCGTGATTGAATTTGCGAGCGTCAATGCTTACAAATGTATAAATCTTAGCCAGGCGCAGCGTGAGGTGCCATTCAAATGGGTGAACGCTGGCGATC‑‑CTCAGCAGGTAGCCATTGAg < 1:912587/150‑1 (MQ=255) gAAAGTTACAAATATAGGGCTGTCCTCAGTCGTGATTGAATTTGCGAGCGTCAATGCTTCCAAATTTATAAATCTTAGCCAGGCGCAGCGTGAGGTGCCATTCAAATGGGTGAACGCTGGCGCTC‑‑CGCAGCAGGTAGCCATTGAGGTCaa < 1:426928/150‑1 (MQ=255) aCAAATATAGGGCTGTCCTCAGTCGTGATTGAATTTGCGAGCGTCAATGCTTCCAAATTTATAAATCTTAGCCAGGCGCAGCGTGAGGTGCCATTCAAATGGGTGAACGCTGGCGATC‑‑CTCAGCAGGTAGCCATTGAGGTCAATATCag < 1:221426/149‑1 (MQ=255) aCAAATATAGGGCTGTCCTCAGTCGTGATTGAATTTGCGAGCGTCAATGCTTCCAAATTTATAAATCTTAGCCAGGCGCAGCGTGAGGTGCCATTCAAATGGGTGAACGCTGGCGATC‑‑CTCAGCAGGTAGCCATTGAGGTCAATATCag > 2:221426/1‑149 (MQ=255) gCTGTCCTCAGTCGTGATTGAATTTGCGAGCGTCAATGCTTCCAAATTTATAAATCTTAGCCAGGCGCAGCGTGAGGTGCCATTCAAATGGGTGAACGCTGGCGATC‑‑CTCAGCAGGTAGCCATTGAGGTCAATATCAGAGATTTTTCGGt > 1:459707/1‑150 (MQ=255) ttGAATTTGCGAGCGTGAATGCTTCCAAGTGTATATGTTGTAGCCGGGGGGAACGTGAGGTCGCAATCACATGGAGGATGTCTTGTGTTC‑‑CGCGTCAGGGAGCCATTGTGGTCAATATCAGAGATTTTTCGGTCTATGAAAGTTTGCtgc < 2:459707/150‑3 (MQ=255) cAATGCTTCCAAATTTATAAATCTTAGCCAGGCGCAGCGTGAGGTGCCATTCAAATGGGTGAACGCTGGCGATC‑‑CTCAGCAGGTAGCCATTGAGGTCAATATCAGAGATTTTTCGGTCTATGAAAGTTTGCTACTGACTTCTGACGAGCa < 1:755603/150‑1 (MQ=255) tGCTTCCAAATTTATAAATCTTAGCCAGTCGCAGCGTGAGGTGCCATTCAAATGGGTGAACGCTGGCGATC‑‑CTCAGCAGGTAGCCATTGAGGTCAATATCAGAGATTTTTCGGTCTATGAAAGTTTGCTACTGACTTCTGACGAGCATGa < 1:19977/150‑1 (MQ=255) cAAATTTATAAATCTTAGCCAGGCGCAGCGTGAGGTGCAATTCAAATGGGTGAACGCTGGAGCTC‑‑CTCAGCAGGTGGCCATTGTGGTTGGGATCAGAGAGTTGTCGGTCTATGAAAGTTTGCTACTGACTTCTGACGAGCATGAGTTGGa > 2:971224/1‑150 (MQ=255) aaaTTTATAAATCTTAGCCAGGCGCAGCGTGAGGTGCCATTCAAATGGGTGAACGCTGGCGATC‑‑CTCAGCAGGTAGCCATTGAGGTCAATATCAGAGATTTTTCGGTCTATGAAAGTTTGCTACTGACTTCTGACGAGCATGAGTTGGAg > 1:1036078/1‑150 (MQ=255) ccAGGCGCAGCGTGAGGTGCCATTCAAATGGGTGAGCG‑TTGCAGTCAGGACGGCA‑GCAACCAGTGAGGGCAAGAGCAGAGATTTTTCGGTCTATGAAAGTTTGCTACTGACTTCTGACGAGCATGAGTTGGAGCTAGCCGGAGCCTTCGa > 1:570670/1‑150 (MQ=255) cAGGCGCAGCGTGAGGTGCCATTCAAATGGGTGAacgctgcgcctggctaagatttataaatttggaagcattgacgctcgcaaattcaatcacgactga > 2:694967‑M2/1‑34 (MQ=255) cAGGCGCAGCGTGAGGTGCCATTCAAATGGGTGAacgctgcgcctggctaagatttataaatttggaagcattgacgctcgcaaattcaatcacgactga < 1:694967‑M2/100‑67 (MQ=255) aGGCGCAGCGTGAGGTGCCATTCAAATGGGTGAacgctgcgcctggctaagatttataaatttggaagcattgacgctcgcaaattcaatcacgactgaggacagccctatatttgtaactttcattttataagcttccttcctactgca < 2:898996‑M2/150‑118 (MQ=255) gTGAGGTGCCATTCAAATGGGTGAACGCTGGCGATC‑‑CTCAGCAGGTAGCCATTGAGGTCAATATCAGAGATTTTTCGGTCTATGAAAGTTTGCTACTGACTTCTGACGAGCATGAGTTGGAGCTAGCCGGAGCCTTCGAAAAATTTAGGc < 2:1036078/150‑1 (MQ=255) gTGAGGTGCCATTCAAATGGGTGAACGCTGGCGATC‑‑CTCAGCAGGTAGCCATTGAGGTCAATATCAGAGATTTTTCGGTCTATGAAAGTTTGCTACTGACTTCTGACGAGCATGAGTTGGAGCTAGCCGGAGCCTTCGAAAAATTTAGGc < 1:66747/150‑1 (MQ=255) ccATTCAAATGGGTGAACGCTGGCGATC‑‑CTCAGCAGGTAGCCATTGAGGTCAATATCAGAGATTTTTCGGTCTATGAAAGTTTGCTACTGACTTCTGACGAGc > 2:416427/1‑103 (MQ=255) ccATTCAAATGGGTGAACGCTGGCGATC‑‑CTCAGCAGGTAGCCATTGAGGTCAATATCAGAGATTTTTCGGTCTATGAAAGTTTGCTACTGACTTCTGACGAGc < 1:416427/103‑1 (MQ=255) cAAATGGGTGAACGCTGGCGATC‑‑CTCAGCAGGTAGCCATTGAGGTCAATATCAGAGATTTTTCGGTCTATGAAAGTTTGCTACTGACTTCTGACGAGCATGAGTTGGAGCTAGCCGGAGCCTTCGAAAAATTTAGGCTGGATGaaaaaaa < 2:654723/150‑1 (MQ=255) | AGATGGCGATGCAGTAGGAAGGAAGCTTATAAAATGAAAGTTACAAATATAGGGCTGTCCTCAGTCGTGATTGAATTTGCGAGCGTCAATGCTTCCAAATTTATAAATCTTAGCCAGGCGCAGCGTGAGGTGCCATTCAAATGGGTGAACGCTGGCGATC‑‑CTCAGCAGGTAGCCATTGAGGTCAATATCAGAGATTTTTCGGTCTATGAAAGTTTGCTACTGACTTCTGACGAGCATGAGTTGGAGCTAGCCGGAGCCTTCGAAAAATTTAGGCTGGATGAAAAAAA > NC_002947/2003510‑2003796 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |