New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2452851 =	56 (1.290)	3 (0.070)	3/240	NT	6.1%	coding (2311/3450 nt)	mfd	transcription‑repair coupling factor
	?	NC_002947	2452893 =	39 (0.950)					coding (2269/3450 nt)	mfd	transcription‑repair coupling factor

GCGCAGCAGCGCCTCCTTGACCGTGCTCTTGTTCTGTTCCATGACGAAGGTGCGCACAGACAGGCGGCGTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCGATGATGGCCAGGCCCAGGTCCTTGAAGCGTACGTCGTCCTGCAGCAGCTTGTGGGTGCCGATGAGGATGT  >  NC_002947/2452744‑2453042                                                                                                                                                      |                                                                                                                                                      gcgcAGCAGCGCCTCCTTGACCGTGCTCTTGTTCTGTTCCATGACGAAGGTGCGCACAGACAGGCGGCGTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGt                                                                                                                                                       >  1:114300/1‑150 (MQ=255) gcgcAGCAGCGCCTCCTTGACCGTGCTCTTGTTCTGTTCCATGACGAAGGTGCGCACAGACAGGCGGCGTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGt                                                                                                                                                       >  1:731527/1‑150 (MQ=255)   gcagcaGCGCCTCCTTGACCGTGCTCTTGTTCTGTTCCATGACGAAGGTGCGCACAGACAGGCGGCGTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCa                                                                                                                                                     >  1:399932/1‑150 (MQ=255)         acctgggcctggccatcatcgatgaagagcaccgctttggcgtgcgccagaaagaacagctgaaggcgctgcgcagcgaggtcgatatcctcaccctgaCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGa                                                                                                                                               >  1:566085‑M1/100‑150 (MQ=255)             ctcctTGACCGTGCTCTTGTTCTGTTCCATGACGAAGGTGCGCACAGACAGGCGGCGTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGat                                                                                                                                           <  1:310136/150‑1 (MQ=255)               cctTGACCGTGCTCTTGTTCTGTTCCATGACGAAGGTGCGCACAGACAGGCGGCGTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGatat                                                                                                                                         >  1:876060/1‑150 (MQ=255)               cctTGACCGTGCTCTTGTTCTGTTCCATGACGAAGGTGCGCACAGACAGGCGGCGTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGatat                                                                                                                                         <  2:543714/150‑1 (MQ=255)                ctTGACCGTGCTCTTGTTCTGTTCCATGACGAAGGTGCGCACAGACAGGCGGCGTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATc                                                                                                                                        <  2:438155/150‑1 (MQ=255)                        tGCTCTTGTTCTGTTCCATGACGAAGGTGCGCACAGACAGGCGGCGTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGc                                                                                                                                >  2:1000293/1‑150 (MQ=255)                         gCTCTTGTTCTGTTCCATGACGAAGGTGCGCACAGACAGGCGGCGTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCt                                                                                                                               >  1:812095/1‑150 (MQ=255)                          atcgatgaagagcaccgctttggcgtgcgccagaaagaacagctgaaggcgctgcgcagcgaggtcgatatcctcaccctgaCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAgg                                                                                                                                                   <  1:840006‑M1/47‑1 (MQ=255)                          atcgatgaagagcaccgctttggcgtgcgccagaaagaacagctgaaggcgctgcgcagcgaggtcgatatcctcaccctgaCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAgg                                                                                                                                                   >  2:840006‑M1/83‑129 (MQ=255)                                  ctgttcCATGACGAAGGTGCGCACAGACAGGCGGCGTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAgcgc                                                                                                                      <  2:485901/150‑1 (MQ=255)                                   tgttcCATGACGCAGGTGCGCACAGACAGGCGGCGTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCCCCGCCATATTCAGCGTGCGCGGACTCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGcc                                                                                                                     <  2:618328/150‑1 (MQ=255)                                       ccATGACGAAGGTGCGCACAGACAGGCGGCGTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGCATCGGCGTGGCGGTCAGGGGGAGGATATCGACCTCGCCGCGCAGCGCCTTCa                                                                                                                 >  2:132882/1‑150 (MQ=255)                                       ccATGACGAAGGTGCGCACAGACAGGCGGCGTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCa                                                                                                                 <  2:719872/150‑1 (MQ=255)                                        cATGACGAAGGTGCGCACAGACAGGCGGCGTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAg                                                                                                                <  2:254776/150‑1 (MQ=255)                                        cATGACGAAGGTGCGCACAGACAGGCGGCGTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAg                                                                                                                <  2:388751/150‑1 (MQ=255)                                            aCGAAGGTGCGCACAGACAGGCGGCGTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGt                                                                                                            <  2:199908/150‑1 (MQ=255)                                                  gTGCGCACAGACAGGCGGCGTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGttctttc                                                                                                      <  1:1000293/150‑1 (MQ=255)                                                        acagacagGCGGCGTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGgcgc                                                                                                >  2:877903/1‑150 (MQ=255)                                                            acagGCGGCGTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGc                                                                                            >  2:759107/1‑150 (MQ=255)                                                                    cgTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCgg                                                                                    <  2:876060/150‑1 (MQ=255)                                                                        cTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGNGct                                                                                <  2:702404/150‑1 (MQ=255)                                                                                  ggCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAAACGGCGTCTTCTTCAGTGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCgat                                                                      <  1:252166/150‑1 (MQ=255)                                                                                  ggCGATGAACGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCTGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCCAAGCGGTGCTCTTCATCgat                                                                      >  2:775308/1‑150 (MQ=255)                                                                                     gatgatCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGc                                                                                            >  1:843626/1‑125 (MQ=255)                                                                                     gatgatCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGc                                                                                            <  2:843626/125‑1 (MQ=255)                                                                                     gatgatCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCgatgat                                                                   >  2:741279/1‑150 (MQ=255)                                                                                     gatgatCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCgatgat                                                                   >  1:1011830/1‑150 (MQ=255)                                                                                     gatgatCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGAGCGGAATCGGCGTGGCGGTCAGGGTGAGTATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCgatgat                                                                   <  1:345584/150‑1 (MQ=255)                                                                                      atgatCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCGatgatg                                                                  <  1:877903/150‑1 (MQ=255)                                                                                      atgatCGACAGGTCGCGCATGCCCGCCACCGCCATGTTAGGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCGatgatg                                                                  <  1:336662/150‑1 (MQ=255)                                                                                             aCAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCGATGATGGCCAGGc                                                           >  2:31435/1‑150 (MQ=255)                                                                                                  tCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTTTTCATCGATGATGGCAAGGCCCAgg                                                      <  2:42614/150‑1 (MQ=255)                                                                                                  tCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCGATGATGGCCAGGCCCAg                                                       <  2:658066/149‑1 (MQ=255)                                                                                                  tCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCGATGATGGCCAGGCCCAg                                                       >  1:658066/1‑149 (MQ=255)                                                                                                   tcaccctgaccgccacgccgattccgcgcacgctgaacatggcggtggcggTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCGATGATGGCCAGGCCCAGGt                                                     >  1:566085‑M2/52‑150 (MQ=255)                                                                                                    gcgcATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCAt                                                                          >  1:864202/1‑128 (MQ=255)                                                                                                    gcgcATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCAt                                                                          <  2:864202/128‑1 (MQ=255)                                                                                                    gcgcATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCGATGATGGCCAGGCCCAGGTc                                                    >  2:72051/1‑150 (MQ=255)                                                                                                       cctgaccgccacgccgattccgcgcacgctgaacatggcggtggcggTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCgat                                                                      <  1:840006‑M2/82‑1 (MQ=255)                                                                                                       cctgaccgccacgccgattccgcgcacgctgaacatggcggtggcggTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCgat                                                                      >  2:840006‑M2/48‑129 (MQ=255)                                                                                                       cATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCGATGATGGCCAGGCCCAGGTCCtt                                                 <  1:759107/150‑1 (MQ=255)                                                                                                          gccaGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCGATGATGGCCAGGCCCAGGTCCTTGaa                                              >  1:788168‑M1/5‑150 (MQ=255)                                                                                                          gCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCGATGATGGCCAGGCCCAGGTCCTTGaa                                              <  2:450359/150‑1 (MQ=255)                                                                                                            CCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTg                                                                                  <  1:802819‑M1/112‑1 (MQ=255)                                                                                                            CCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTg                                                                                  >  2:802819‑M1/1‑112 (MQ=255)                                                                                                                CACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCATCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCGATGATGGCCAGGCCCAGGTCCTTGAAGCGTAc                                        <  2:639205‑M1/150‑1 (MQ=255)                                                                                                                CACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCACCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCGATGATGGCCAGGCCCAGGTCCTTGAAGCGTAc                                        <  2:639491‑M1/150‑1 (MQ=255)                                                                                                                       aTGTTCAGCGTGAGCGGCTTCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCGATGATGGCCAGGCCCAGGTCCTTGAAGCGCACGTCGTcc                                 >  2:831421/1‑150 (MQ=255)                                                                                                                                      ggAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCGATGATGGCCAGGCCCAGGTCCTTGAAGCGTACGTCGTCCTGCAGCAGCTTGTgg                  <  2:731527/150‑1 (MQ=255)                                                                                                                                      ggAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCGATGATGGCCAGGCCCAGGTCCTTGAAGCGTACGTCGTCCTGCAGCAGCTTGTgg                  >  2:803366/1‑150 (MQ=255)                                                                                                                                          tCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCAAAAGCGGTGCTCTTCATCGATGATGGCCAGGCCCAGGTCCTTGAAGCGTGCGTCGTCCTGCAGCAGCTTGTGGGTGc              >  1:940889/1‑150 (MQ=255)                                                                                                                                                tggcggTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCGATGATGGCCAGGCCCAGGTCCTTGAAGCGTACGTCGTCCTGCAGCAGCTTGTGGGTGCCGATGa        <  1:760304‑M2/144‑1 (MQ=255)                                                                                                                                                      tCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCGATGATGGCCAGGCCCAGGTCCTTGAAGCGTACGTCGTCCTGCAGCAGCTTGTGGGTGCCGATGAGGATGt  <  2:683683/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      GCGCAGCAGCGCCTCCTTGACCGTGCTCTTGTTCTGTTCCATGACGAAGGTGCGCACAGACAGGCGGCGTGCTGGCGGCGTGGCGATGATCGACAGGTCGCGCATGCCCGCCACCGCCATGTTCAGCGTGCGCGGAATCGGCGTGGCGGTCAGGGTGAGGATATCGACCTCGCTGCGCAGCGCCTTCAGCTGTTCTTTCTGGCGCACGCCAAAGCGGTGCTCTTCATCGATGATGGCCAGGCCCAGGTCCTTGAAGCGTACGTCGTCCTGCAGCAGCTTGTGGGTGCCGATGAGGATGT  >  NC_002947/2452744‑2453042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.