New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2650744 =	39 (0.900)	3 (0.070)	3/242	NT	7.6%	intergenic (‑77/‑103)	PP_mr32/PP_2323	P14 ncRNA/hypothetical protein
	?	NC_002947	2650780 =	36 (0.870)					intergenic (‑113/‑67)	PP_mr32/PP_2323	P14 ncRNA/hypothetical protein

CCGACAAGATTTGCGACGTGTCTGTGAAAAAAATCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGATTACAATCGTCCAATGGTCGAAGCGGCAACAGGTGGCATAGAG  >  NC_002947/2650631‑2650927                                                                                                                                                      |                                                                                                                                                    gattgtaatcgttcggatcgtctggcactgacaagatagtaggcaccgcaagcgggattgctcaaggtgctggcggttaaaaaaggctaaaccgccgcctaggcgactttcccAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTg                                                                                                                                                     >  2:581128‑M1/114‑150 (MQ=255)       aGATTTGCGACGTGTCTGTGAAAAAAATCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTCAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAg                                                                                                                                               >  2:823673/1‑150 (MQ=255)         tcgttcggatcgtctggcactgacaagatagtaggcaccgcaagcgggattgctcaaggtgctggcggttaaaaaaggctaaaccgccgcctaggcgactttcccAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTgg                                                                                                                                                    <  2:55057‑M1/38‑1 (MQ=255)         tcgttcggatcgtctggcactgacaagatagtaggcaccgcaagcgggattgctcaaggtgctggcggttaaaaaaggctaaaccgccgcctaggcgactttcccAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTgg                                                                                                                                                    >  1:55057‑M1/106‑143 (MQ=255)          tttGAGAAGTGTCTGTGAGAAAAATCTGCATGGTTCGCAAGCGGTAGTGGTACAGGAACTTTTTTGTTGAACTAAGTGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCTGTGGCTGTTTGGCGGGCTTGGGAAAGTCg                                                                                                                                            <  2:62428/150‑1 (MQ=255)             gCGACGTGTCTGTGAAAAAAATCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCt                                                                                                                                         >  2:529418/1‑150 (MQ=255)                     tCTGTGAAAAAAATCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGgcggcg                                                                                                                                 >  2:559378/1‑150 (MQ=255)                       tgtgAAAAAAATCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGt                                                                                                                               >  1:702731/1‑150 (MQ=255)                        gtgAAAAAAATCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGtt                                                                                                                              >  2:306304/1‑150 (MQ=255)                          gAAAAAAATCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTa                                                                                                                            <  1:529418/150‑1 (MQ=255)                            aaaaaaTCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGc                                                                                                                          <  2:129468/150‑1 (MQ=255)                            aaaaaaTCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGc                                                                                                                          <  1:823178/150‑1 (MQ=255)                                       aGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCtttttagatg                                                                                                               <  1:38722/150‑6 (MQ=255)                                                aaGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCAcc                                                                                                      >  1:997300/1‑150 (MQ=255)                                                      ttGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGc                                                                                                >  1:374160/1‑150 (MQ=255)                                                         tgGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAAt                                                                                             <  1:306304/150‑1 (MQ=255)                                                              cAGNAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGc                                                                                        >  2:698458/1‑150 (MQ=255)                                                                  aaCTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGc                                                                                    <  1:509879/150‑1 (MQ=255)                                                                     ttttttGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGt                                                                                 >  1:102157/1‑150 (MQ=255)                                                                     ttttttGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGt                                                                                 <  1:273884/150‑1 (MQ=255)                                                                                aCTAAGGGTGACTTCAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCt                                                                      <  1:823673/150‑1 (MQ=255)                                                                                 cTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCtt                                                                     >  2:118653/1‑150 (MQ=255)                                                                                    aGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCACCTGCGTTGCGGTCTAGCCTTTTTTAACCGCCAGCACCTTGCGCAATCCCGCCTGCGGTGCCTACTATCTTGTc                                                                  >  1:861014/1‑150 (MQ=255)                                                                                       gTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTNAGt                                                               <  2:702731/150‑1 (MQ=255)                                                                                            tttAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGc                                                                                                                          <  1:808771/86‑1 (MQ=255)                                                                                            tttAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGc                                                                                                                          >  2:808771/1‑86 (MQ=255)                                                                                                  tGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGTTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATc                                                    >  1:901254/1‑150 (MQ=255)                                                                                                  tGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATc                                                    <  1:559378/150‑1 (MQ=255)                                                                                                      gATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGaa                                                >  2:407582/1‑150 (MQ=255)                                                                                                        tCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACg                                              >  2:1096035/1‑150 (MQ=255)                                                                                                          aGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGAt                                            >  1:222993/1‑150 (MQ=255)                                                                                                          aGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGAt                                            >  1:622759/1‑150 (MQ=255)                                                                                                           gCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGACGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGAtt                                           >  1:438919/1‑150 (MQ=255)                                                                                                            cGTGTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGATTa                                          <  2:369466/150‑1 (MQ=255)                                                                                                              tCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGATTACa                                        >  1:744853/1‑150 (MQ=255)                                                                                                              tCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGATTACa                                        >  2:625509/1‑150 (MQ=255)                                                                                                              tCTTAAGCCCTAGTACATCCGGTGGCTGTTGGACGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGATTACa                                        >  2:625668/1‑150 (MQ=255)                                                                                                                ccaagcccgcccaacagccaccggatgtactagggcttGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGa                                             <  2:55057‑M2/105‑1 (MQ=255)                                                                                                                ccaagcccgcccaacagccaccggatgtactagggcttGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGa                                             >  1:55057‑M2/39‑143 (MQ=255)                                                                                                                 caagcccgcccaacagccaccggatgtactagggcttGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGATTACAATc                                     >  2:581128‑M2/38‑150 (MQ=255)                                                                                                                   AGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGATTACAATCGt                                   <  1:707937‑M1/150‑1 (MQ=255)                                                                                                                       CTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGATTACAATCGTCCaa                               >  2:222993‑M1/1‑150 (MQ=255)                                                                                                                                   gTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGATTACAATCGTCCAATGGTCGAAGCgg                   <  2:861014/150‑1 (MQ=255)                                                                                                                                   gTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGAGGAACAATTTTCCTTGTCAGTGCCAGACGATCCGAACGATTACAATCGTCCAATGGTCGAAGCgg                   <  2:997300/150‑1 (MQ=255)                                                                                                                                               cgggcTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGATTACAATCGTCCAATGGTCGAAGCGGCAACAGGTGGCa       <  2:901254/150‑1 (MQ=255)                                                                                                                                                   cttGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGATTACAATCGTCCAATGGTCGAAGCGGCAACAGGTGGCATaga   <  2:707937‑M2/147‑1 (MQ=255)                                                                                                                                                    ttGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGa                                                         >  1:440170‑M2/3‑95 (MQ=255)                                                                                                                                                    ttGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGa                                                         >  1:436848‑M2/3‑95 (MQ=255)                                                                                                                                                    ttGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGa                                                         <  2:440170‑M2/93‑1 (MQ=255)                                                                                                                                                    ttGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGa                                                         <  2:436848‑M2/93‑1 (MQ=255)                                                                                                                                                    ttGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGATTACAATCGTCCAATGGTCGAAGCGGCAACAGGTGGCATagag  >  1:55253‑M2/3‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                    CCGACAAGATTTGCGACGTGTCTGTGAAAAAAATCTGCAGGGTTCGCAAGCGGTTGTGGTACAGGAACTTTTTTGTTGAACTAAGGGTGACTTTAACTGTCGATCAGCGTCTTAAGCCCTAGTACATCCGGTGGCTGTTGGGCGGGCTTGGGAAAGTCGCCTAGGCGGCGGTTTAGCCTTTTTTAACCGCCAGCACCTTGAGCAATCCCGCTTGCGGTGCCTACTATCTTGTCAGTGCCAGACGATCCGAACGATTACAATCGTCCAATGGTCGAAGCGGCAACAGGTGGCATAGAG  >  NC_002947/2650631‑2650927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.