New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2720805	39 (0.900)	3 (0.080)	5/234	NT	7.5%	intergenic (+16/+34)	PP_2380/PP_2381	hypothetical protein/hypothetical protein
	?	NC_002947	= 2720810	38 (0.950)					intergenic (+21/+29)	PP_2380/PP_2381	hypothetical protein/hypothetical protein

TCTGACCCTGACCATCGAGGATGCCAAGGGCGCCAAGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAGCGCGGATCTTGCCGGCGGCG  >  NC_002947/2720669‑2720953                                                                                                                                               |                                                                                                                                                tctGACCCTGACCATCGAGGATGCCAAGGGCGCCAAGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAgcggccct                                                                                                                                         <  2:953653‑M2/150‑9 (MQ=255)       cctgaccATCGAGGATGCCAAGGGCGCCAAGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGTCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGAGGCCcttttctt                                                                                                                                   >  2:62403/1‑150 (MQ=255)        ctgaccATCGAGGATGCCAAGGGCGCCAAGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCcgtttcttt                                                                                                                                  >  1:622484/1‑150 (MQ=255)                cGAGGATGCCAAGCGCGCCAAGGAAACCCTGGAAGTTCAGGTACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTgc                                                                                                                          <  1:650073/150‑1 (MQ=255)                 gAGGATGCCAAGGGCGCCAAGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTgcg                                                                                                                         >  2:351740/1‑150 (MQ=255)                   ggATGCCAAGGGCGCCAAGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGcc                                                                                                                       <  1:117798/150‑1 (MQ=255)                         cAAGGGCGCCAAGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAg                                                                                                                 >  1:598953/1‑150 (MQ=255)                                  cAAGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAg                                                                                                        <  1:134131/150‑1 (MQ=255)                                   aaGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGCTGAACcggccctttgatctgtcagtggttcat                                                                                                                       <  2:999894‑M2/136‑28 (MQ=255)                                   aaGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGCTGAACcggccctttgatctgtcagtggttcat                                                                                                                       >  1:999894‑M2/1‑109 (MQ=255)                                          cccTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAg                                                                                                <  2:598953/150‑1 (MQ=255)                                           ccTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGc                                                                                               >  2:1047949/1‑150 (MQ=255)                                            cTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCg                                                                                              >  2:776891/1‑150 (MQ=255)                                            cTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCg                                                                                              <  1:776891/150‑1 (MQ=255)                                                  gTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGt                                                                                        >  1:843120/1‑150 (MQ=255)                                                       ggCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAgg                                                                                   <  1:953653/150‑1 (MQ=255)                                                          acaAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTc                                                                                >  2:241273/1‑150 (MQ=255)                                                          acaAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTc                                                                                >  2:1059015/1‑150 (MQ=255)                                                                      gcTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAgg                                                                    <  1:474092/150‑1 (MQ=255)                                                                        tCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAg                                                                                    >  2:816727/1‑132 (MQ=255)                                                                        tCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAg                                                                                    <  1:816727/132‑1 (MQ=255)                                                                        tCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGt                                                                  >  2:659669/1‑150 (MQ=255)                                                                           aCGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCtt                                                               >  2:519014/1‑150 (MQ=255)                                                                           aCGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCtt                                                               >  1:706370/1‑150 (MQ=255)                                                                              ccGACGTGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCCGGGTCTTGCg                                                            >  2:656949/1‑150 (MQ=255)                                                                                        tggtggGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGCTGAACcggccctttgatct                                                                                                                                    <  2:638961‑M2/70‑15 (MQ=255)                                                                                        tggtggGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGCTGAACcggccctttgatct                                                                                                                                    >  1:638961‑M2/1‑56 (MQ=255)                                                                                               cATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCgg                                           >  2:1020525/1‑150 (MQ=255)                                                                                                       catgcacatgAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGt                                   <  2:706370/150‑1 (MQ=255)                                                                                                       catgcacatgAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGt                                   <  2:745284/150‑1 (MQ=255)                                                                                                             catgAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCcttttctttt                                                                                                                                 >  1:211132/1‑50 (MQ=255)                                                                                                             catgAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCcttttctttt                                                                                                                                 <  2:211132/50‑1 (MQ=255)                                                                                                                    cACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAg                      >  2:765831/1‑150 (MQ=255)                                                                                                                         aCAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAGCGCgg                 >  1:798280/1‑150 (MQ=255)                                                                                                                          cAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTATGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAGCGCGGa                <  1:351740/150‑1 (MQ=255)                                                                                                                           aGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTgg                                                     <  2:484130/112‑1 (MQ=255)                                                                                                                           aGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTgg                                                     >  1:484130/1‑112 (MQ=255)                                                                                                                             aTCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAg                                                                                    <  1:888207/79‑1 (MQ=255)                                                                                                                             aTCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAg                                                                                    >  2:888207/1‑79 (MQ=255)                                                                                                                             aTCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAGCGCGGATCt             >  2:436803/1‑150 (MQ=255)                                                                                                                                aaaGGGCCGC‑GTTCAgcggccctttgatctgtcagtggttcatgtgcatgtgatcatgcccaccacccgcgtcggcgttgagcgcacgcacttgtgcctgaacttccagggtttccttggcgcccttggcatcctcgatggtcagggtca          <  2:930660‑M2/150‑136 (MQ=255)                                                                                                                                aaaGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGACCCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAGCGCGGATCTTGc          >  1:628062/1‑150 (MQ=255)                                                                                                                                aaaGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAGCGCGGATCTTGc          >  1:420583/1‑150 (MQ=255)                                                                                                                                aaaGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAGCGCGGATCTTGc          <  1:659669/150‑1 (MQ=255)                                                                                                                                aaaGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAGCGCGGATCTTGc          >  1:329363/1‑150 (MQ=255)                                                                                                                                        gc‑gTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAGCGCGGATCTTGCcggcggcg  <  2:954171/150‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                TCTGACCCTGACCATCGAGGATGCCAAGGGCGCCAAGGAAACCCTGGAAGTTCAGGCACAAGTGCGTGCGCTCAACGCCGACGCGGGTGGTGGGCATGATCACATGCACATGAACCACTGACAGATCAAAGGGCCGC‑GTTCAGCGGCCCTTTTCTTTTCAACTGCGCCTTTCAGCTACGAAAGCGCGGCAGCGGTCTGTCGAGGGTCAGCGACGTCAGGGTCTTGCGAACCTGGGCCTCATCGGCCTCCAGTGCCTTCAGGCTAGCGCGGATCTTGCCGGCGGCG  >  NC_002947/2720669‑2720953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.